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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Not detected
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Outer plexiform layer:
Low
Photoreceptor cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA057499
Photoreceptor cells
Not detected
Limiting membrane
Not detected
Outer plexiform layer
Low
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
190.9
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 190.9
Samples: 105
Max nTPM: 370.8
Min nTPM: 86.2
Std nTPM: 50.2
Median nTPM:
237_1
82 years, male
370.8
172_1
72 years, female
336.3
218_1
71 years, female
299.8
35_1
74 years, female
290.9
6_1
73 years, female
286.4
217_1
76 years, male
273.9
375_1
74 years, female
267.3
126_1
63 years, male
266.4
389_1
86 years, female
262.9
386_1
76 years, male
258.3
189_1
76 years, male
249.2
319_1
81 years, male
246.0
229_1
69 years, female
245.0
405_1
91 years, male
234.8
246_1
77 years, male
234.7
307_1
66 years, female
233.5
9_1
66 years, female
233.0
117_1
61 years, male
232.9
352_1
62 years, male
229.2
347_1
72 years, male
227.8
468_1
89 years, male
227.2
526_1
61 years, male
227.1
115_1
83 years, male
226.6
335_1
73 years, female
221.9
415_1
77 years, female
221.6
43_1
64 years, female
220.6
316_1
62 years, male
220.1
425_1
59 years, female
217.6
321_1
62 years, female
217.2
32_1
67 years, male
216.3
177_1
74 years, male
215.0
406_1
79 years, male
212.7
354_1
81 years, female
212.6
379_1
60 years, male
212.1
490_1
67 years, female
210.3
355_1
70 years, female
209.2
265_1
87 years, male
208.0
153_1
70 years, female
207.1
480_1
63 years, male
206.9
145_1
84 years, male
204.7
414_1
84 years, female
202.7
162_1
79 years, female
201.5
495_1
57 years, female
201.4
291_1
76 years, male
200.9
266_1
85 years, male
200.4
466_1
57 years, female
200.2
499_1
55 years, female
199.5
503_1
68 years, male
198.1
447_1
81 years, male
194.6
324_1
76 years, male
192.9
377_1
82 years, female
191.9
376_1
75 years, female
191.7
251_1
78 years, male
191.5
243_1
75 years, male
189.9
517_1
88 years, male
184.5
384_1
83 years, male
183.3
317_1
60 years, male
182.1
2_1
77 years, female
181.4
404_1
82 years, female
181.3
292_1
71 years, male
180.3
163_1
78 years, male
179.6
348_1
84 years, male
177.6
137_1
83 years, male
177.1
394_1
75 years, female
175.4
42_1
85 years, male
173.5
81_1
67 years, male
170.8
142_1
61 years, female
170.2
254_1
77 years, female
166.9
288_1
66 years, female
166.9
518_1
75 years, female
166.4
318_1
68 years, male
165.6
356_1
87 years, female
164.7
173_1
67 years, male
164.5
350_1
84 years, female
164.5
315_1
62 years, female
163.7
353_1
82 years, female
163.5
311_1
78 years, male
161.4
349_1
83 years, male
161.3
18_1
88 years, male
161.2
293_1
68 years, female
160.0
322_1
76 years, male
159.6
396_1
62 years, male
158.2
286_1
68 years, female
156.3
149_1
88 years, male
155.7
320_1
89 years, female
155.6
4_1
88 years, female
150.3
351_1
91 years, male
148.1
99_1
64 years, male
145.9
313_1
79 years, female
144.3
120_1
70 years, female
139.6
119_1
70 years, female
138.0
264_1
73 years, female
133.5
413_1
59 years, female
129.1
314_1
67 years, male
128.1
139_1
64 years, female
126.1
308_1
70 years, female
123.5
506_1
65 years, male
122.6
491_1
89 years, female
121.7
17_1
71 years, male
116.2
109_1
81 years, female
112.6
89_1
63 years, male
108.7
41_1
94 years, female
96.0
295_1
61 years, female
93.9
452_1
88 years, female
92.6
501_1
88 years, male
86.2
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.