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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:174.1 nTPM
HPA:119.2 nTPM
GTEx:174.1 nTPM
FANTOM5:240.1 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA008763Antibody HPA028747Antibody CAB019394
Glandular cells HighHighMedium






SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

119.2
overview
Male, age 65
Small intestine sample 232
nTPM: 108.3
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 121.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 137.2
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 109.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

174.1
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 174.1
Samples: 207

Max nTPM: 424.8
Min nTPM: 66.6
Std nTPM: 51.3
Median nTPM: 176.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 424.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 309.4
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 278.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 277.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 274.2
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 274.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 269.9
GTEX-14PK6-1626-SM-6871I 70-79 years, female 264.7
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 255.4
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 255.2
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 254.4
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 251.0
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 250.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 249.7
GTEX-1C475-1426-SM-793CH 40-49 years, female 248.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 245.9
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 245.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 245.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 244.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 243.6
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 242.8
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 241.8
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 241.3
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 232.1
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 230.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 230.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 228.2
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 228.0
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 227.7
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 223.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 222.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 222.1
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 221.6
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 219.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 217.2
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 216.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 215.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 214.2
GTEX-1122O-1326-SM-5H11F 60-69 years, female 213.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 213.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 213.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 213.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 212.4
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 211.7
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 211.0
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 209.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 209.5
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 208.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 206.8
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 206.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 206.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 205.8
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 205.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 205.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 204.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 204.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 203.9
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 203.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 202.6
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 201.8
GTEX-14PKU-1626-SM-6871C 40-49 years, female 201.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 200.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 200.7
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 200.0
GTEX-183FY-1626-SM-793D8 20-29 years, male 199.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 197.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 197.8
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 197.4
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 197.1
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 196.7
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 196.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 196.3
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 196.2
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 196.0
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 195.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 194.7
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 194.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 194.2
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 193.8
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 192.8
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 192.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 191.6
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 191.3
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 189.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 187.3
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 187.2
GTEX-13113-1226-SM-5EGHT 60-69 years, female 187.2
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 187.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 186.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 186.9
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 184.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 183.3
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 182.8
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 181.7
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 181.4
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 181.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 181.2
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 180.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 179.9
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 179.3
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 178.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 177.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 177.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 176.4
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 174.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 173.1
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 172.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 171.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 171.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 170.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 169.7
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 167.6
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 165.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 165.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 162.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 162.4
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 162.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 161.8
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 161.5
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 161.5
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 160.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 159.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 159.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 158.0
GTEX-13O61-1326-SM-5KM31 60-69 years, male 157.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 155.2
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 154.1
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 154.0
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 153.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 152.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 151.9
GTEX-1192X-2526-SM-59868 50-59 years, male 151.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 151.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 151.2
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 150.8
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 149.3
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 148.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 148.2
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 148.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 147.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 146.5
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 146.2
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 145.8
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 145.6
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 145.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 145.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 145.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 145.1
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 143.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 143.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 141.6
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 141.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 140.8
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 140.6
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 138.8
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 138.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 138.5
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 138.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 138.0
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 137.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 136.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 136.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 136.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 134.8
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 132.7
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 129.2
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 125.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 125.0
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 125.0
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 123.5
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 123.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 122.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 121.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 121.6
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 121.5
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 118.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 118.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 115.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 115.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 114.6
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 111.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 111.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 110.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 109.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 108.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 107.7
GTEX-13111-1426-SM-5DUW3 50-59 years, male 106.9
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 105.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 104.0
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 103.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 100.7
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 100.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 98.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 98.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 98.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 91.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 91.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 90.9
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 90.4
GTEX-178AV-1226-SM-GOR11 40-49 years, male 89.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 89.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 89.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 89.2
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 80.2
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 75.5
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 74.1
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 66.6
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

240.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 240.1
FF:10024-101D6 15,40,85 years, mixed 240.1

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