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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
25.5
nTPM
Monaco:
61.6
nTPM
Schmiedel:
137.2
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.5
HPA sample
nTPM
gdT-cell nTPM: 25.5
Samples: 6
Max nTPM: 29.1
Min nTPM: 18.3
P10809_1007
23.4
P10809_1022
26.8
P10809_1041
18.3
P10809_1060
29.0
P10809_1077
29.1
P10809_1098
26.4
MAIT T-cell nTPM: 22.6
Samples: 6
Max nTPM: 32.6
Min nTPM: 15.4
P10809_1006
17.0
P10809_1024
15.4
P10809_1043
23.9
P10809_1062
32.6
P10809_1083
22.0
P10809_1097
24.4
Memory CD4 T-cell nTPM: 19.9
Samples: 6
Max nTPM: 28.9
Min nTPM: 13.1
P10809_1014
17.3
P10809_1026
17.5
P10809_1045
20.4
P10809_1064
28.9
P10809_1086
22.1
P10809_1113
13.1
Memory CD8 T-cell nTPM: 24.3
Samples: 5
Max nTPM: 28.7
Min nTPM: 20.0
P10809_1012
22.4
P10809_1027
28.7
P10809_1046
22.5
P10809_1065
28.1
P10809_1111
20.0
Naive CD4 T-cell nTPM: 25.0
Samples: 6
Max nTPM: 41.6
Min nTPM: 18.6
P10809_1015
20.6
P10809_1030
18.6
P10809_1049
26.6
P10809_1068
41.6
P10809_1085
19.5
P10809_1112
22.8
Naive CD8 T-cell nTPM: 22.0
Samples: 6
Max nTPM: 31.8
Min nTPM: 16.9
P10809_1016
21.0
P10809_1031
16.9
P10809_1050
20.0
P10809_1069
31.8
P10809_1087
23.3
P10809_1110
19.1
T-reg nTPM: 20.5
Samples: 6
Max nTPM: 31.4
Min nTPM: 11.2
P10809_1018
11.2
P10809_1037
20.1
P10809_1056
16.7
P10809_1075
31.4
P10809_1094
20.6
P10809_1106
22.7
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
61.6
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 48.5
Samples: 4
Max nTPM: 64.9
Min nTPM: 31.2
RHH5202_R3573
31.2
RHH5230_R3602
42.4
RHH5259_R3631
64.9
RHH5288_R3660
55.4
Effector memory CD8 T-cell nTPM: 51.6
Samples: 4
Max nTPM: 69.4
Min nTPM: 31.4
RHH5203_R3574
60.5
RHH5231_R3603
45.1
RHH5260_R3632
69.4
RHH5289_R3661
31.4
MAIT T-cell nTPM: 51.7
Samples: 4
Max nTPM: 58.8
Min nTPM: 46.3
RHH5233_R3605
48.1
RHH5205_R3576
58.8
RHH5262_R3634
46.3
RHH5297_R3663
53.4
Memory CD4 T-cell TFH nTPM: 43.2
Samples: 4
Max nTPM: 52.4
Min nTPM: 26.0
RHH5300_R3666
50.4
RHH5236_R3608
44.0
RHH5265_R3637
52.4
RHH5208_R3579
26.0
Memory CD4 T-cell Th1 nTPM: 51.7
Samples: 4
Max nTPM: 71.9
Min nTPM: 39.8
RHH5210_R3581
45.2
RHH5302_R3668
39.8
RHH5238_R3610
71.9
RHH5267_R3639
49.9
Memory CD4 T-cell Th1/Th17 nTPM: 42.3
Samples: 4
Max nTPM: 62.9
Min nTPM: 23.3
RHH5303_R3669
23.3
RHH5211_R3582
37.8
RHH5239_R3611
62.9
RHH5268_R3640
45.0
Memory CD4 T-cell Th17 nTPM: 44.6
Samples: 4
Max nTPM: 57.1
Min nTPM: 30.8
RHH5304_R3670
57.1
RHH5212_R3583
37.0
RHH5240_R3612
53.6
RHH5269_R3641
30.8
Memory CD4 T-cell Th2 nTPM: 39.5
Samples: 4
Max nTPM: 50.8
Min nTPM: 33.2
RHH5305_R3671
50.8
RHH5213_R3584
39.4
RHH5241_R3613
33.2
RHH5270_R3642
34.4
Naive CD4 T-cell nTPM: 37.9
Samples: 4
Max nTPM: 54.8
Min nTPM: 25.2
RHH5306_R3672
54.8
RHH5214_R3585
38.0
RHH5242_R3614
25.2
RHH5271_R3643
33.4
Naive CD8 T-cell nTPM: 42.5
Samples: 4
Max nTPM: 59.9
Min nTPM: 20.0
RHH5201_R3572
20.0
RHH5229_R3601
59.9
RHH5258_R3630
39.2
RHH5287_R3659
51.0
Non-Vd2 gdTCR nTPM: 61.6
Samples: 4
Max nTPM: 84.2
Min nTPM: 50.3
RHH5235_R3607
84.2
RHH5264_R3636
61.4
RHH5207_R3578
50.3
RHH5299_R3665
50.4
T-reg nTPM: 49.7
Samples: 4
Max nTPM: 56.7
Min nTPM: 36.5
RHH5301_R3667
56.7
RHH5237_R3609
36.5
RHH5266_R3638
56.2
RHH5209_R3580
49.2
Terminal effector memory CD4 T-cell nTPM: 44.7
Samples: 2
Max nTPM: 49.8
Min nTPM: 39.5
RHH5243_R3615
49.8
RHH5272_R3644
39.5
Terminal effector memory CD8 T-cell nTPM: 55.7
Samples: 4
Max nTPM: 59.4
Min nTPM: 51.9
RHH5232_R3604
56.8
RHH5204_R3575
54.5
RHH5261_R3633
51.9
RHH5296_R3662
59.4
Vd2 gdTCR nTPM: 55.9
Samples: 4
Max nTPM: 68.8
Min nTPM: 43.2
RHH5234_R3606
68.8
RHH5206_R3577
56.4
RHH5263_R3635
55.1
RHH5298_R3664
43.2
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
