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  • FHL1
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Not detected
Enterocytes: Not detected
Enterocytes - Microvilli: Not detected
Goblet cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:230.5 nTPM
HPA:101.0 nTPM
GTEx:230.5 nTPM
FANTOM5:94.0 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA001040Antibody HPA001391Antibody CAB020817
Endocrine cells -Not detected-
Enterocytes -Not detected-
Enterocytes - Microvilli -Not detected-
Glandular cells Not detected-High
Goblet cells -Not detected-




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

101.0
overview
Male, age 65
Small intestine sample 232
nTPM: 61.1
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 102.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 123.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 117.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

230.5
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 230.5
Samples: 207

Max nTPM: 1048.3
Min nTPM: 38.9
Std nTPM: 210.1
Median nTPM: 139.1
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1048.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 958.4
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 869.1
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 843.8
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 816.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 815.3
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 805.4
GTEX-178AV-1226-SM-GOR11 40-49 years, male 791.0
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 789.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 785.1
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 725.8
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 724.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 675.0
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 659.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 626.7
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 624.4
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 620.5
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 607.2
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 595.6
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 591.3
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 585.9
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 583.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 571.2
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 565.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 523.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 511.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 494.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 493.3
GTEX-117YX-0326-SM-5GICL 50-59 years, male 492.7
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 445.0
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 436.8
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 429.4
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 427.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 412.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 407.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 406.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 402.7
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 395.8
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 359.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 358.8
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 346.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 337.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 333.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 332.4
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 331.0
GTEX-1192X-2526-SM-59868 50-59 years, male 324.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 321.5
GTEX-13111-1426-SM-5DUW3 50-59 years, male 321.0
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 305.3
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 302.6
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 302.6
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 293.1
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 287.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 283.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 277.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 266.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 262.8
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 258.1
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 256.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 254.3
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 251.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 249.5
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 249.1
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 244.5
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 227.9
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 225.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 213.3
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 211.0
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 201.0
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 198.1
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 190.4
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 190.0
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 189.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 182.4
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 180.7
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 176.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 175.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 173.5
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 172.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 171.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 170.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 168.0
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 165.1
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 164.9
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 160.4
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 160.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 158.7
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 157.3
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 154.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 152.9
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 152.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 149.8
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 149.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 148.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 148.1
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 148.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 144.8
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 144.6
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 144.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 144.5
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 143.0
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 142.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 140.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 139.1
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 139.0
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 138.0
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 137.6
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 136.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 136.1
GTEX-ZTSS-0926-SM-59865 40-49 years, male 135.0
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 134.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 131.6
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 130.9
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 129.4
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 128.4
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 127.7
GTEX-1C475-1426-SM-793CH 40-49 years, female 127.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 125.9
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 124.9
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 124.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 124.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 124.0
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 123.8
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 122.5
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 122.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 119.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 118.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 117.8
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 115.1
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 114.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 113.9
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 109.9
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 108.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 108.6
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 108.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 107.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 106.4
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 105.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 105.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 104.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 102.7
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 100.8
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 100.3
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 99.8
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 99.4
GTEX-13113-1226-SM-5EGHT 60-69 years, female 99.4
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 99.1
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 98.4
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 98.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 97.7
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 97.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 95.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 94.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 94.8
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 94.3
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 93.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 93.3
GTEX-14PK6-1626-SM-6871I 70-79 years, female 93.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 92.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 92.0
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 91.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 91.3
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 90.7
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 89.6
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 89.4
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 89.3
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 87.4
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 85.3
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 85.1
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 84.8
GTEX-YFCO-1326-SM-664NV 40-49 years, male 84.1
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 83.9
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 83.9
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 83.1
GTEX-14PN3-2026-SM-68729 60-69 years, female 81.3
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 80.5
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 79.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 77.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 77.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 76.3
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 74.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 74.2
GTEX-1122O-1326-SM-5H11F 60-69 years, female 73.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 71.1
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 71.1
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 71.1
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 70.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 70.4
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 70.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 70.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 66.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 66.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 65.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 65.4
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 65.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 62.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 61.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 61.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 61.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 58.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 57.4
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 56.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 53.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 50.3
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 47.8
GTEX-111YS-1426-SM-5GID8 60-69 years, male 45.0
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 38.9
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

94.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 94.0
FF:10024-101D6 15,40,85 years, mixed 94.0

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