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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:47.1 nTPM
GTEx:47.1 nTPM
FANTOM5:80.3 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA005434
Squamous epithelial cells High


VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

47.1
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 47.1
Samples: 170

Max nTPM: 199.1
Min nTPM: 2.9
Std nTPM: 35.0
Median nTPM: 35.4
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 199.1
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 170.4
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 164.2
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 156.5
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 150.3
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 148.3
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 137.0
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 128.6
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 126.9
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 123.4
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 113.1
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 109.0
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 104.2
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 103.8
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 102.8
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 101.0
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 95.0
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 90.2
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 84.6
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 82.8
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 81.6
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 80.8
GTEX-QCQG-1226-SM-48U23 50-59 years, female 80.6
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 78.5
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 77.9
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 76.9
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 76.2
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 76.1
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 72.2
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 71.9
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 70.1
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 68.7
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 68.4
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 66.8
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 65.5
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 65.4
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 64.6
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 62.7
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 62.5
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 60.2
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 59.7
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 58.9
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 56.7
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 55.9
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 54.8
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 54.1
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 53.9
GTEX-1C475-0526-SM-793AC 40-49 years, female 52.7
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 52.5
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 52.3
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 52.0
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 51.9
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 51.1
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 50.9
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 50.8
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 50.7
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 50.7
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 50.5
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 50.0
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 49.8
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 49.1
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 48.9
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 48.9
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 48.0
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 47.9
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 47.8
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 46.0
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 44.6
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 44.0
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 42.9
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 42.9
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 42.8
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 42.5
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 42.2
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 41.4
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 41.2
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 40.8
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 40.8
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 39.8
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 39.4
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 38.2
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 38.0
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 37.5
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 36.2
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 35.7
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 35.1
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 35.0
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 35.0
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 34.1
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 34.1
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 34.1
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 33.9
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 33.8
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 33.4
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 33.1
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 32.7
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 32.5
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 32.0
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 32.0
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 31.7
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 31.4
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 31.3
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 31.1
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 30.3
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 30.2
GTEX-16NPV-2526-SM-6M483 50-59 years, female 30.1
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 29.7
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 29.5
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 29.2
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 29.1
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 29.1
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 28.8
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 28.2
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 28.2
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 28.0
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 27.4
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 27.1
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 26.7
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 26.7
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 26.4
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 25.8
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 25.8
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 25.7
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 25.4
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 25.2
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 24.7
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 24.1
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 23.9
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 23.8
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 23.6
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 23.5
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 23.2
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 22.1
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 22.0
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 21.3
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 21.2
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 20.9
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 20.3
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 20.2
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 19.7
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 18.5
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 18.3
GTEX-14PKU-1326-SM-6871B 40-49 years, female 18.2
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 17.9
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 17.8
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 17.5
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 17.4
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 16.8
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 16.4
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 16.3
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 16.2
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 16.0
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 15.8
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 14.5
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 14.1
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 13.6
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 13.4
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 13.4
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 13.1
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 11.9
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 11.7
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 11.7
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 10.7
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 10.6
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 10.2
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 10.1
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 9.5
GTEX-S341-1226-SM-4AD5S 40-49 years, female 8.9
GTEX-11I78-2026-SM-5987C 50-59 years, female 7.1
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 2.9
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

80.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 80.3
FF:10204-103F6 68 years, female 80.3

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