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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:526.0 nTPM
HPA:526.0 nTPM
GTEx:331.4 nTPM
FANTOM5:1090.6 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA029397Antibody CAB030029
Glandular cells HighMedium





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

526.0
overview
Male, age 65
Small intestine sample 232
nTPM: 363.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 739.5
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 330.2
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 670.7

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

331.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 331.4
Samples: 207

Max nTPM: 2552.6
Min nTPM: 18.9
Std nTPM: 331.8
Median nTPM: 221.0
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 2552.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1438.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 1335.9
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 1309.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1236.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1162.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 1084.2
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1077.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1069.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1016.4
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 996.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 932.8
GTEX-YFCO-1326-SM-664NV 40-49 years, male 910.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 881.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 874.8
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 874.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 872.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 861.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 820.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 801.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 799.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 730.5
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 718.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 716.7
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 713.1
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 662.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 656.0
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 654.9
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 654.2
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 635.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 620.5
GTEX-14PN3-2026-SM-68729 60-69 years, female 612.7
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 608.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 605.4
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 588.0
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 587.7
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 586.3
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 563.4
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 518.4
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 500.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 500.6
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 499.7
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 494.8
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 489.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 475.3
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 461.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 460.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 457.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 457.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 454.1
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 452.6
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 449.7
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 446.4
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 443.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 442.5
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 434.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 433.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 416.8
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 413.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 411.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 399.0
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 393.6
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 391.6
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 387.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 384.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 384.6
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 380.5
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 375.3
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 372.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 368.5
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 368.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 349.7
GTEX-13113-1226-SM-5EGHT 60-69 years, female 347.6
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 344.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 338.8
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 332.4
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 327.7
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 325.3
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 323.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 316.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 315.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 313.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 311.5
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 305.0
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 302.8
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 296.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 296.4
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 289.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 282.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 280.9
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 274.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 261.5
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 255.1
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 246.0
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 240.2
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 238.7
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 237.4
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 234.6
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 231.7
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 226.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 225.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 225.0
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 222.5
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 221.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 217.2
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 211.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 206.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 203.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 203.6
GTEX-1C475-1426-SM-793CH 40-49 years, female 203.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 201.8
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 201.0
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 199.1
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 199.0
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 195.3
GTEX-13O61-1326-SM-5KM31 60-69 years, male 190.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 189.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 186.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 182.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 181.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 181.3
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 180.3
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 177.0
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 174.9
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 169.8
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 165.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 163.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 163.3
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 160.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 156.6
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 155.2
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 154.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 152.7
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 150.4
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 146.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 143.5
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 142.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 140.6
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 139.6
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 139.4
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 138.0
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 136.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 130.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 128.1
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 127.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 123.6
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 123.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 119.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 118.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 117.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 111.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 107.8
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 107.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 104.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 103.9
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 102.3
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 100.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 99.5
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 97.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 95.1
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 93.9
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 88.4
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 84.8
GTEX-1192X-2526-SM-59868 50-59 years, male 82.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 80.3
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 79.8
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 79.2
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 78.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 78.6
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 75.7
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 72.7
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 70.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 70.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 70.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 69.0
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 66.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 66.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 65.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 64.7
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 59.7
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 58.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 57.9
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 57.2
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 55.3
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 51.1
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 49.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 48.5
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 47.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 45.1
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 43.0
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 42.6
GTEX-178AV-1226-SM-GOR11 40-49 years, male 41.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 38.6
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 37.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 35.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 34.1
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 27.2
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 26.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 26.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 25.9
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 23.7
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 23.1
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 22.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 19.8
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 19.5
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 19.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 18.9
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1090.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 1090.6
FF:10024-101D6 15,40,85 years, mixed 1090.6

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