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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Medium
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
3.4
nTPM
FANTOM5:
16.1
Scaled Tags Per Million
CAUDATE - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA029215
Antibody HPA044301
Antibody HPA049694
Glial cells
Medium
Low
Medium
Neuronal cells
Medium
Low
High
BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
3.4
Sample id
Sample description
nTPM
Caudate nucleus nTPM: 3.2
1854
Male, age 80, left hemisphere
4.6
2288
Male, age 75, left hemisphere
4.3
2289
Male, age 61, right hemisphere
4.1
1857
Female, age 85, left hemisphere
3.8
2481
Female, age 94, left hemisphere
3.0
2290
Female, age 72, unknown
2.4
1781
Male, age 74, unknown
2.3
2846
Female, age 79, unknown
1.0
Globus pallidus, externus nTPM: 2.5
2772
Female, age 79, unknown
4.7
2395
Male, age 75, both hemispheres
2.8
1996
Male, age 80, right hemisphere
2.1
2646
Male, age 61, right hemisphere
1.8
2567
Female, age 72, unknown
1.0
Globus pallidus, internus nTPM: 2.6
2037
Male, age 80, right hemisphere
4.1
2483
Female, age 94, right hemisphere
2.9
1818
Male, age 74, unknown
2.7
2287
Male, age 75, right hemisphere
2.7
2111
Female, age 85, right hemisphere
2.3
2566
Female, age 72, unknown
2.0
2778
Female, age 91, both hemispheres
1.6
Nucleus accumbens nTPM: 3.0
2824
Male, age 61, right hemisphere
4.7
1856
Female, age 91, right hemisphere
3.5
2286
Male, age 75, left hemisphere
3.3
1806
Female, age 85, left hemisphere
3.2
2732
Male, age 80, right hemisphere
2.4
1783
Male, age 74, unknown
2.3
2698
Female, age 72, unknown
2.3
2391
Female, age 94, left hemisphere
2.1
Nucleus basalis of Meynert nTPM: 2.7
2821
Male, age 75, both hemispheres
3.3
2393
Male, age 80, right hemisphere
3.2
2569
Male, age 61, both hemispheres
2.5
2484
Female, age 94, left hemisphere
1.6
Nucleus of the diagonal band nTPM: 3.4
2029
Male, age 61, right hemisphere
5.0
2775
Male, age 80, right hemisphere
3.8
1979
Male, age 74, unknown
2.9
1812
Female, age 91, both hemispheres
2.8
2195
Female, age 85, both hemispheres
2.3
Putamen nTPM: 2.5
1829
Male, age 74, unknown
3.5
2466
Female, age 79, unknown
3.3
1838
Male, age 80, right hemisphere
2.8
2482
Female, age 94, left hemisphere
2.5
2647
Male, age 75, left hemisphere
2.2
1937
Female, age 91, right hemisphere
1.9
2489
Female, age 72, unknown
1.6
Septal nuclei nTPM: 2.0
2199
Male, age 80, right hemisphere
2.2
2629
Female, age 94, right hemisphere
2.2
2031
Female, age 72, unknown
2.1
1960
Male, age 74, unknown
2.0
2059
Female, age 85, both hemispheres
2.0
2009
Female, age 91, both hemispheres
1.6
2394
Male, age 61, left hemisphere
1.6
Stria terminalis, bed nucleus nTPM: 3.0
2486
Female, age 94, both hemispheres
4.0
1974
Female, age 91, both hemispheres
3.7
2201
Male, age 74, unknown
1.4
BASAL GANGLIA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
The Human Protein Atlas project is funded
