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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
22.1
nTPM
FANTOM5:
76.7
Scaled Tags Per Million
BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis
BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
22.1
Sample id
Sample description
nTPM
Caudate nucleus nTPM: 21.0
2289
Male, age 61, right hemisphere
26.4
2288
Male, age 75, left hemisphere
25.2
2290
Female, age 72, unknown
22.7
2481
Female, age 94, left hemisphere
21.5
1854
Male, age 80, left hemisphere
20.2
1857
Female, age 85, left hemisphere
17.7
1781
Male, age 74, unknown
17.2
2846
Female, age 79, unknown
17.2
Globus pallidus, externus nTPM: 22.1
2567
Female, age 72, unknown
26.4
1996
Male, age 80, right hemisphere
22.0
2646
Male, age 61, right hemisphere
22.0
2395
Male, age 75, both hemispheres
20.8
2772
Female, age 79, unknown
19.2
Globus pallidus, internus nTPM: 21.4
1818
Male, age 74, unknown
23.2
2566
Female, age 72, unknown
22.6
2037
Male, age 80, right hemisphere
22.5
2111
Female, age 85, right hemisphere
21.7
2778
Female, age 91, both hemispheres
21.4
2287
Male, age 75, right hemisphere
19.3
2483
Female, age 94, right hemisphere
19.2
Nucleus accumbens nTPM: 20.0
2824
Male, age 61, right hemisphere
23.2
2286
Male, age 75, left hemisphere
22.4
2698
Female, age 72, unknown
21.4
2391
Female, age 94, left hemisphere
20.4
1806
Female, age 85, left hemisphere
19.3
2732
Male, age 80, right hemisphere
18.6
1856
Female, age 91, right hemisphere
17.6
1783
Male, age 74, unknown
17.3
Nucleus basalis of Meynert nTPM: 21.2
2393
Male, age 80, right hemisphere
25.2
2484
Female, age 94, left hemisphere
20.4
2569
Male, age 61, both hemispheres
19.7
2821
Male, age 75, both hemispheres
19.5
Nucleus of the diagonal band nTPM: 18.2
2029
Male, age 61, right hemisphere
20.9
1979
Male, age 74, unknown
19.8
2195
Female, age 85, both hemispheres
19.3
2775
Male, age 80, right hemisphere
16.6
1812
Female, age 91, both hemispheres
14.6
Putamen nTPM: 21.0
1838
Male, age 80, right hemisphere
24.9
1829
Male, age 74, unknown
23.7
2489
Female, age 72, unknown
22.4
1937
Female, age 91, right hemisphere
21.4
2647
Male, age 75, left hemisphere
18.9
2482
Female, age 94, left hemisphere
18.6
2466
Female, age 79, unknown
17.3
Septal nuclei nTPM: 17.5
2009
Female, age 91, both hemispheres
19.7
2199
Male, age 80, right hemisphere
19.5
2629
Female, age 94, right hemisphere
18.6
2394
Male, age 61, left hemisphere
18.4
2059
Female, age 85, both hemispheres
18.0
2031
Female, age 72, unknown
14.6
1960
Male, age 74, unknown
13.4
Stria terminalis, bed nucleus nTPM: 20.9
2201
Male, age 74, unknown
25.4
2486
Female, age 94, both hemispheres
20.5
1974
Female, age 91, both hemispheres
16.8
BASAL GANGLIA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
The Human Protein Atlas project is funded
