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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Medium
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
48.1
nTPM
HPA Brain:
115.9
nTPM
GTEx:
48.1
nTPM
FANTOM5:
566.9
Scaled Tags Per Million
Pig:
202.5
nTPM
Mouse:
99.2
nTPM
Allen mouse:
1.5
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA067595
Antibody HPA069443
Antibody CAB022062
Glial cells
Medium
Medium
Medium
Neuronal cells
Not detected
Not detected
High
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
115.9
Sample id
Sample description
nTPM
Hippocampus nTPM: 113.2
1898
Male, age 80, left hemisphere
126.5
2529
Female, age 94, left hemisphere
121.0
2148
Female, age 91, left hemisphere
111.3
2621
Female, age 67, right hemisphere
109.1
1855
Male, age 76, left hemisphere
106.9
1911
Female, age 85, right hemisphere
104.3
Dentate gyrus nTPM: 92.5
2528
Male, age 74, both hemispheres
109.5
2010
Male, age 76, both hemispheres
108.0
2530
Female, age 94, left hemisphere
92.1
2246
Female, age 85, both hemispheres
90.6
1927
Female, age 91, both hemispheres
79.4
2531
Female, age 67, both hemispheres
75.1
Entorhinal gyrus nTPM: 115.9
2117
Female, age 91, right hemisphere
143.1
2613
Female, age 94, left hemisphere
131.0
1938
Female, age 85, left hemisphere
119.9
2764
Male, age 80, right hemisphere
108.9
1787
Male, age 76, left hemisphere
108.3
2686
Male, age 75, right hemisphere
84.3
Hippocampus, CA1 nTPM: 93.2
2527
Male, age 74, both hemispheres
114.2
2045
Male, age 76, both hemispheres
101.1
1873
Female, age 85, both hemispheres
100.1
2082
Female, age 91, right hemisphere
85.6
2749
Male, age 80, left hemisphere
64.9
Hippocampus, CA2 nTPM: 97.0
2249
Male, age 74, both hemispheres
131.3
1940
Female, age 85, left hemisphere
115.8
2113
Female, age 91, right hemisphere
102.2
2437
Female, age 94, left hemisphere
87.2
1963
Male, age 80, left hemisphere
81.4
1892
Male, age 76, both hemispheres
64.1
Hippocampus, CA3 nTPM: 80.7
1891
Female, age 85, both hemispheres
92.8
2861
Female, age 67, both hemispheres
88.9
1867
Male, age 76, both hemispheres
84.5
2436
Male, age 74, both hemispheres
81.6
2620
Female, age 94, left hemisphere
75.3
2137
Male, age 80, left hemisphere
60.8
Parahippocampal cortex nTPM: 111.2
2250
Female, age 67, right hemisphere
145.6
2245
Female, age 91, both hemispheres
123.3
1933
Female, age 85, both hemispheres
120.7
2018
Male, age 76, both hemispheres
120.6
2622
Female, age 67, right hemisphere
117.8
2532
Female, age 72, left hemisphere
105.8
1990
Female, age 91, right hemisphere
105.0
1850
Male, age 80, both hemispheres
95.5
2693
Female, age 94, both hemispheres
94.3
2692
Male, age 74, both hemispheres
83.6
Perirhinal gyrus nTPM: 110.2
2521
Female, age 94, right hemisphere
112.5
1841
Female, age 85, right hemisphere
112.0
1847
Female, age 91, left hemisphere
111.1
2848
Male, age 76, right hemisphere
108.4
1794
Male, age 80, right hemisphere
106.8
Subiculum nTPM: 108.4
2729
Female, age 91, right hemisphere
144.3
2619
Male, age 74, both hemispheres
117.4
1977
Female, age 85, both hemispheres
106.2
2042
Male, age 76, both hemispheres
104.5
2438
Female, age 94, left hemisphere
95.8
1901
Male, age 80, both hemispheres
82.3
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
48.1
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 48.1
Samples: 197
Max nTPM: 103.6
Min nTPM: 20.9
Std nTPM: 14.2
Median nTPM: 47.0
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
103.6
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
95.2
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
85.6
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
83.9
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
83.7
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
82.4
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
78.3
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
75.1
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
74.2
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
72.7
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
71.2
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
71.2
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
70.1
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
69.8
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
69.2
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
68.6
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
68.2
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
67.6
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
66.7
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
66.0
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
65.3
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
65.2
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
64.6
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
64.5
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
63.4
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
63.4
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
62.6
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
62.2
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
62.1
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
61.1
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
60.9
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
60.8
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
60.7
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
60.7
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
60.5
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
60.5
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
60.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
59.9
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
59.9
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
59.6
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
59.5
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
58.7
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
58.7
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
58.5
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
58.3
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
58.2
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
58.0
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
56.7
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
56.3
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
56.3
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
55.9
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
55.8
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
55.6
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
55.4
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
54.8
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
54.8
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
54.7
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
54.0
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
53.9
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
53.8
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
53.7
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
53.5
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
53.5
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
53.4
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
53.3
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
53.2
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
53.2
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
52.7
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
52.4
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
52.2
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
52.1
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
52.0
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
51.9
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
51.7
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
51.4
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
51.3
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
51.1
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
51.0
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
50.9
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
50.8
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
50.7
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
50.7
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
50.7
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
50.6
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
50.2
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
50.2
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
50.1
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
49.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
49.8
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
49.6
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
49.2
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
49.2
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
49.1
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
48.4
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
48.2
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
47.9
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
47.7
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
47.5
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
47.0
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
46.7
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
46.6
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
46.5
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
46.2
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
46.1
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
45.5
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
45.4
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
45.0
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
44.9
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
44.6
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
44.4
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
44.4
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
44.2
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
44.2
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
44.0
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
43.9
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
43.6
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
43.5
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
43.2
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
42.9
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
42.4
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
42.4
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
42.3
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
42.3
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
42.0
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
42.0
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
41.9
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
41.4
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
41.3
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
41.0
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
40.9
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
40.8
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
40.8
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
40.3
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
39.6
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
39.5
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
39.5
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
39.3
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
39.0
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
38.6
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
38.6
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
38.4
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
38.3
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
38.3
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
38.2
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
38.1
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
37.7
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
37.6
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
37.5
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
37.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
37.4
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
36.9
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
36.4
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
36.3
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
35.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
35.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
35.3
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
35.2
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
35.1
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
35.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
34.6
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
34.4
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
34.4
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
34.1
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
34.1
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
34.0
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
33.8
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
33.7
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
33.2
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
33.2
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
33.2
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
33.0
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
32.8
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
31.8
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
31.7
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
31.5
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
31.3
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
31.2
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
31.2
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
31.1
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
31.1
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
30.2
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
29.8
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
29.0
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
29.0
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
28.5
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
28.1
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
28.0
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
27.6
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
27.5
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
26.8
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
26.3
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
26.0
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
25.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
24.6
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
23.8
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
21.9
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
20.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
99.2
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 99.2
Samples: 4
Max nTPM: 116.0
Min nTPM: 88.0
Sample A
Male
94.3
Sample B
Male
98.5
Sample C
Female
88.0
Sample D
Female
116.0
Hippocampal formation nTPM: 65.1
Samples: 4
Max nTPM: 73.3
Min nTPM: 62.1
Sample A
Male
73.3
Sample B
Male
62.5
Sample C
Female
62.1
Sample D
Female
62.3
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.