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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
19.7
nTPM
HPA Brain:
30.6
nTPM
GTEx:
19.7
nTPM
FANTOM5:
71.6
Scaled Tags Per Million
Pig:
23.3
nTPM
Mouse:
15.2
nTPM
Allen mouse:
0.3
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
30.6
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 22.2
2666
Male, age 74, left hemisphere
34.8
2019
Male, age 18, unknown
27.3
1870
Female, age 42, unknown
26.6
2828
Female, age 72, unknown
26.0
1830
Male, age 51, unknown
22.8
1833
Male, age 53, unknown
20.9
2411
Female, age 72, unknown
20.4
1827
Male, age 72, unknown
17.2
2219
Male, age 76, both hemispheres
13.8
2586
Male, age 75, left hemisphere
12.2
Dorsal raphe nucleus nTPM: 22.4
2016
Female, age 72, unknown
24.2
1828
Male, age 53, unknown
23.7
2750
Male, age 76, both hemispheres
22.5
2298
Female, age 72, unknown
21.7
2047
Male, age 72, unknown
19.7
Inferior colliculus nTPM: 25.9
1890
Male, age 53, unknown
29.1
2097
Female, age 72, unknown
28.1
1848
Female, age 42, unknown
24.0
2849
Male, age 72, unknown
22.3
Median raphe nucleus nTPM: 19.6
2220
Male, age 76, midline
19.6
Periaquaductal grey, anterior nTPM: 22.1
2502
Female, age 75, unknown
29.3
1947
Male, age 18, unknown
19.6
1795
Male, age 51, unknown
17.2
Periaquaductal grey, dorsal nTPM: 20.1
1831
Male, age 72, unknown
25.4
2464
Female, age 72, unknown
21.9
1840
Male, age 53, unknown
17.7
2850
Male, age 76, both hemispheres
15.4
Periaquaductal grey, lateral nTPM: 21.0
2053
Male, age 18, unknown
23.6
2140
Male, age 76, both hemispheres
21.1
2272
Male, age 74, both hemispheres
18.2
Pretectal area nTPM: 20.8
2316
Male, age 76, right hemisphere
28.1
1817
Female, age 42, unknown
27.3
1816
Male, age 51, unknown
23.3
2007
Male, age 72, unknown
22.9
1815
Male, age 53, unknown
22.7
2224
Female, age 72, unknown
21.3
1944
Female, age 72, unknown
21.0
2667
Female, age 75, unknown
17.6
2825
Male, age 18, unknown
16.7
2273
Male, age 74, both hemispheres
14.4
2407
Male, age 75, both hemispheres
13.0
Red nucleus nTPM: 30.6
1954
Female, age 42, unknown
40.3
1904
Male, age 53, unknown
35.0
1821
Female, age 72, unknown
33.3
2503
Female, age 72, unknown
33.2
2823
Male, age 76, right hemisphere
31.5
2769
Male, age 72, unknown
31.4
1865
Male, age 51, unknown
31.1
2227
Male, age 72, unknown
30.5
2785
Male, age 18, unknown
27.3
2588
Male, age 74, left hemisphere
26.8
2725
Female, age 75, unknown
25.6
2584
Male, age 75, left hemisphere
21.1
Substantia nigra nTPM: 24.9
2665
Male, age 74, both hemispheres
47.0
2241
Male, age 72, unknown
24.8
2699
Male, age 18, unknown
24.8
1851
Male, age 51, unknown
24.7
2409
Female, age 72, unknown
24.3
1916
Female, age 42, unknown
23.9
2590
Female, age 75, unknown
23.3
1889
Female, age 72, unknown
22.4
2583
Male, age 75, right hemisphere
17.9
1941
Male, age 53, unknown
15.5
Superior colliculus nTPM: 22.2
2087
Female, age 72, unknown
27.1
1895
Male, age 76, right hemisphere
25.7
2587
Male, age 74, left hemisphere
24.2
1913
Female, age 42, unknown
23.6
1839
Male, age 51, unknown
22.7
1995
Male, age 72, unknown
22.4
2668
Female, age 75, unknown
22.2
2261
Male, age 18, unknown
21.2
1796
Male, age 53, unknown
19.8
2664
Male, age 75, both hemispheres
13.0
Ventral tegmental area nTPM: 25.1
2021
Male, age 53, unknown
30.7
2218
Male, age 76, both hemispheres
26.0
2410
Female, age 72, unknown
25.5
1915
Female, age 42, unknown
25.4
1942
Male, age 51, unknown
22.8
2223
Female, age 72, unknown
20.5
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
19.7
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 19.7
Samples: 139
Max nTPM: 134.3
Min nTPM: 5.0
Std nTPM: 15.4
Median nTPM: 16.0
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
134.3
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
71.5
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
71.3
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
69.3
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
45.7
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
45.4
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
44.7
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
41.5
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
38.2
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
37.5
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
36.3
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
35.6
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
35.1
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
34.2
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
34.1
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
34.0
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
34.0
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
32.9
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
32.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
30.4
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
30.2
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
29.8
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
29.1
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
29.0
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
27.3
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
27.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
27.0
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
26.7
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
25.2
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
25.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
24.6
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
24.0
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
23.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
23.5
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
23.2
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
22.2
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
21.7
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
21.7
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
21.7
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
21.4
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
21.3
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
21.1
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
21.0
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
20.9
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
20.9
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
20.7
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
20.3
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
20.0
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
20.0
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
20.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
19.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
19.4
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
19.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
18.9
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
18.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
18.5
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
18.2
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
17.6
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
17.4
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
17.0
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
16.9
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
16.7
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
16.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
16.6
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
16.1
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
16.1
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
16.0
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
16.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
16.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
16.0
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
15.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
15.7
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
15.7
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
15.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
15.6
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
14.7
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
14.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
14.5
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
14.5
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
14.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
14.3
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
14.0
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
13.8
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
13.8
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
13.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
13.6
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
13.3
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
12.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
12.9
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
12.7
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
12.7
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
12.4
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
12.3
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
12.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
12.1
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
11.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
11.0
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
10.9
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
10.7
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
10.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
10.6
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
10.5
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
10.5
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
10.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
10.2
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
9.9
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
9.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
9.8
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
9.7
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
9.7
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
9.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
9.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
9.6
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
9.5
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
9.4
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
9.4
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
9.4
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
9.3
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
9.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
9.2
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
9.0
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
8.9
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
8.9
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
8.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
8.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
7.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
7.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
7.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
7.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
7.4
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
7.3
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
7.3
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
7.3
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
7.0
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
6.9
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
5.6
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
5.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
5.2
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
5.0
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
15.2
Mouse sample
Sample description
nTPM
Midbrain nTPM: 15.3
Samples: 4
Max nTPM: 16.3
Min nTPM: 14.5
Sample A
Male
14.5
Sample B
Male
16.3
Sample C
Female
15.4
Sample D
Female
14.9
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.