BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.3 nTPM
HPA Brain:42.5 nTPM
GTEx:34.3 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 42.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 37.8
1854 Male, age 80, left hemisphere 41.2
2288 Male, age 75, left hemisphere 41.2
2846 Female, age 79, unknown 40.9
1781 Male, age 74, unknown 40.4
1857 Female, age 85, left hemisphere 39.0
2481 Female, age 94, left hemisphere 38.4
2290 Female, age 72, unknown 33.7
2289 Male, age 61, right hemisphere 27.6
Globus pallidus, externus
nTPM: 37.4
2772 Female, age 79, unknown 43.8
2395 Male, age 75, both hemispheres 43.1
2646 Male, age 61, right hemisphere 35.7
1996 Male, age 80, right hemisphere 34.9
2567 Female, age 72, unknown 29.4
Globus pallidus, internus
nTPM: 39.9
2287 Male, age 75, right hemisphere 54.1
2483 Female, age 94, right hemisphere 41.7
2778 Female, age 91, both hemispheres 41.4
2566 Female, age 72, unknown 38.6
1818 Male, age 74, unknown 38.3
2037 Male, age 80, right hemisphere 35.5
2111 Female, age 85, right hemisphere 29.6
Nucleus accumbens
nTPM: 37.3
1856 Female, age 91, right hemisphere 44.6
1783 Male, age 74, unknown 40.5
2286 Male, age 75, left hemisphere 39.7
2698 Female, age 72, unknown 39.4
1806 Female, age 85, left hemisphere 37.8
2391 Female, age 94, left hemisphere 37.7
2824 Male, age 61, right hemisphere 36.4
2732 Male, age 80, right hemisphere 22.0
Nucleus basalis of Meynert
nTPM: 35.9
2821 Male, age 75, both hemispheres 39.6
2569 Male, age 61, both hemispheres 38.0
2393 Male, age 80, right hemisphere 34.4
2484 Female, age 94, left hemisphere 31.8
Nucleus of the diagonal band
nTPM: 42.5
2775 Male, age 80, right hemisphere 54.2
1812 Female, age 91, both hemispheres 49.4
2195 Female, age 85, both hemispheres 46.6
2029 Male, age 61, right hemisphere 34.6
1979 Male, age 74, unknown 27.9
Putamen
nTPM: 36.6
2466 Female, age 79, unknown 42.3
1838 Male, age 80, right hemisphere 41.1
1937 Female, age 91, right hemisphere 40.6
1829 Male, age 74, unknown 37.5
2647 Male, age 75, left hemisphere 36.6
2482 Female, age 94, left hemisphere 33.5
2489 Female, age 72, unknown 24.7
Septal nuclei
nTPM: 38.2
1960 Male, age 74, unknown 47.4
2031 Female, age 72, unknown 46.8
2629 Female, age 94, right hemisphere 41.3
2009 Female, age 91, both hemispheres 39.0
2059 Female, age 85, both hemispheres 32.7
2394 Male, age 61, left hemisphere 31.4
2199 Male, age 80, right hemisphere 28.6
Stria terminalis, bed nucleus
nTPM: 37.9
1974 Female, age 91, both hemispheres 44.7
2486 Female, age 94, both hemispheres 35.7
2201 Male, age 74, unknown 33.4

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 34.3
GTEx sample id Sample description nTPM
24.831.136.212.251.605101520253035404550
Brain - Caudate (basal ganglia)
Average nTPM: 31.1
Samples: 246

Max nTPM: 54.1
Min nTPM: 12.2
Std nTPM: 8.6
Median nTPM: 31.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 54.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 53.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 51.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 50.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 49.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 48.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 48.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 48.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 48.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 47.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 47.2
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26.735.541.75.063.8051015202530354045505560
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 34.3
Samples: 246

Max nTPM: 63.8
Min nTPM: 5.0
Std nTPM: 10.7
Median nTPM: 35.4
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 63.8
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 63.4
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 55.2
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 53.8
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 53.7
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 53.5
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 53.4
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 53.3
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 52.6
GTEX-NPJ7-0011-R6a-SM-2I3G7 60-69 years, female 52.0
GTEX-1ICLZ-0011-R6b-SM-A9G3A 60-69 years, male 50.6
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29.033.038.515.452.50510152025303540455055
Brain - Putamen (basal ganglia)
Average nTPM: 34.0
Samples: 205

Max nTPM: 56.8
Min nTPM: 11.6
Std nTPM: 8.8
Median nTPM: 33.0
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 56.8
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 56.6
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 55.5
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 54.5
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 53.8
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 52.5
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 52.4
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 51.7
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 50.7
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 50.5
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 49.2
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