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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PDF is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
4.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
4.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
4.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
4.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
4.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
4.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
4.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
3.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
3.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
3.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
3.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
3.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
3.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
3.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
3.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
3.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
3.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
3.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
3.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
3.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
3.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
3.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
3.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
3.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
3.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
3.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
3.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
3.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
3.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
2.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
2.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
2.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
2.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
2.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
2.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
2.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
2.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
2.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
2.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
2.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
2.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
2.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
2.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
2.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
2.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
2.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
2.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
2.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
2.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
2.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
2.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
2.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
2.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
2.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
2.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
2.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
2.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
2.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
2.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
2.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
2.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
2.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
2.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
2.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
2.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
2.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
2.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
2.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
2.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
2.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
2.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
2.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
2.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
2.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
2.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
2.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
2.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
2.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
2.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
2.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
2.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
2.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
2.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
2.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
2.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
2.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
2.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
2.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
2.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
2.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
2.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
2.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
2.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
2.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
2.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
1.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
1.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
1.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
1.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
1.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
1.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
1.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
1.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
1.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
1.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
1.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
1.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
1.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
1.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
1.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
1.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
1.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
1.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
1.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
1.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
1.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
1.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
1.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PDF is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.9
Number of samples
231
Samples
Sample
Description
TPM
DO48759
0 years, male, NA, stage:3, alive, 720 days
38.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
34.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
29.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
28.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
27.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
26.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
25.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
25.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
25.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
25.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
24.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
24.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
24.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
24.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
24.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
22.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
22.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
22.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
22.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
22.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
22.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
22.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
21.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
21.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
21.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
21.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
21.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
20.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
20.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
20.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
20.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
20.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
19.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
19.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
19.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
19.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
19.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
19.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
19.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
19.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
19.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
18.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
18.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
18.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
18.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
18.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
18.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
18.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
18.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
17.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
17.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
17.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
17.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
16.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
16.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
16.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
16.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
16.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
16.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
16.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
16.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
16.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
16.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
16.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
16.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
16.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
16.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
15.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
15.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
15.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
15.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
15.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
15.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
15.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
15.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
15.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
14.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
14.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
14.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
13.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
13.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
13.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
13.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
13.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
12.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
12.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
12.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
11.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
11.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
11.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
11.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
10.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
10.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
6.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
5.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
5.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
755
Tumor
1.3
1041
Tumor
1.0
715
Tumor
1.0
911
Tumor
0.9
387
Tumor
0.9
1045
Tumor
0.8
267
Tumor
0.7
1015
Tumor
0.7
746
Normal
0.7
451
Tumor
0.7
535
Tumor
0.7
557
Tumor
0.6
627
Tumor
0.6
635
Tumor
0.6
568
Normal
0.6
1027
Tumor
0.6
128
Normal
0.5
1026
Normal
0.5
327
Tumor
0.5
741
Tumor
0.5
744
Normal
0.5
474
Normal
0.5
298
Normal
0.5
124
Normal
0.5
564
Normal
0.5
554
Normal
0.4
141
Tumor
0.4
314
Normal
0.4
572
Normal
0.4
278
Normal
0.4
342
Normal
0.4
648
Normal
0.4
742
Normal
0.4
113
Tumor
0.4
1032
Normal
0.4
388
Normal
0.4
698
Normal
0.3
743
Tumor
0.3
111
Normal
0.3
664
Normal
0.3
132
Normal
0.3
466
Normal
0.3
1022
Normal
0.3
232
Normal
0.3
666
Normal
0.3
981
Tumor
0.3
136
Normal
0.3
914
Normal
0.3
452
Normal
0.3
816
Normal
0.3
171
Tumor
0.3
395
Tumor
0.3
332
Normal
0.3
672
Normal
0.3
1028
Normal
0.3
123
Tumor
0.3
534
Normal
0.3
127
Tumor
0.3
878
Normal
0.3
574
Normal
0.3
728
Normal
0.3
142
Normal
0.3
222
Normal
0.3
546
Normal
0.3
114
Normal
0.3
231
Tumor
0.3
426
Normal
0.3
392
Normal
0.3
258
Normal
0.3
368
Normal
0.2
778
Normal
0.2
867
Tumor
0.2
464
Normal
0.2
662
Normal
0.2
366
Normal
0.2
214
Normal
0.2
218
Normal
0.2
723
Tumor
0.2
558
Normal
0.2
713
Tumor
0.2
1014
Normal
0.2
488
Normal
0.2
261
Tumor
0.2
756
Normal
0.2
394
Normal
0.2
312
Normal
0.2
1042
Normal
0.2
162
Normal
0.2
272
Normal
0.2
952
Normal
0.2
862
Normal
0.2
873
Tumor
0.2
722
Normal
0.2
738
Normal
0.2
448
Normal
0.2
925
Tumor
0.2
344
Normal
0.2
462
Normal
0.2
1046
Normal
0.2
436
Normal
0.2
924
Normal
0.2
964
Normal
0.2
456
Normal
0.2
477
Tumor
0.2
714
Normal
0.2
642
Normal
0.2
358
Normal
0.2
422
Normal
0.2
196
Normal
0.2
472
Normal
0.2
874
Normal
0.2
482
Normal
0.1
126
Normal
0.1
494
Normal
0.1
396
Normal
0.1
354
Normal
0.1
696
Normal
0.1
468
Normal
0.1
446
Normal
0.1
172
Normal
0.1
138
Normal
0.1
432
Normal
0.1
356
Normal
0.1
912
Normal
0.1
484
Normal
0.1
361
Tumor
0.1
414
Normal
0.1
866
Normal
0.1
145
Tumor
0.1
423
Tumor
0.1
428
Normal
0.1
852
Normal
0.1
944
Normal
0.1
968
Normal
0.1
1044
Normal
0.1
148
Normal
0.1
858
Normal
0.1
636
Normal
0.1
786
Normal
0.1
473
Tumor
0.1
922
Normal
0.1
268
Normal
0.0
526
Normal
0.0
882
Normal
0.0
864
Normal
0.0
146
Normal
0.0
938
Normal
0.0
851
Tumor
0.0
481
Tumor
0.0
424
Normal
0.0
716
Normal
0.0
383
Tumor
0.0
951
Tumor
0.0
262
Normal
0.0
868
Normal
0.0
536
Normal
0.0
955
Tumor
0.0
538
Normal
0.0
963
Tumor
0.0
518
Normal
0.0
328
Normal
0.0
415
Tumor
0.0
228
Normal
0.0
926
Normal
0.0
386
Normal
0.0
412
Normal
0.0
362
Normal
0.0
818
Normal
0.0
954
Normal
0.0
618
Normal
0.0
186
Normal
0.0
861
Tumor
0.0
217
Tumor
0.0
492
Normal
0.0
745
Tumor
0.0
697
Tumor
0.0
1016
Normal
0.0
1043
Tumor
0.0
966
Normal
0.0
918
Normal
0.0
686
Normal
0.0
956
Normal
0.0
665
Tumor
0.0
824
Normal
-0.1
937
Tumor
-0.1
777
Tumor
-0.1
363
Tumor
-0.1
191
Tumor
-0.1
1031
Tumor
-0.1
984
Normal
-0.1
616
Normal
-0.1
1025
Tumor
-0.1
978
Normal
-0.1
364
Normal
-0.1
376
Normal
-0.1
915
Tumor
-0.1
433
Tumor
-0.1
286
Normal
-0.1
514
Normal
-0.1
478
Normal
-0.1
982
Normal
-0.1
212
Normal
-0.1
352
Normal
-0.1
916
Normal
-0.1
516
Normal
-0.1
341
Tumor
-0.1
671
Tumor
-0.1
977
Tumor
-0.1
976
Normal
-0.1
863
Tumor
-0.1
353
Tumor
-0.1
284
Normal
-0.1
498
Normal
-0.1
227
Tumor
-0.2
721
Tumor
-0.2
628
Normal
-0.2
391
Tumor
-0.2
135
Tumor
-0.2
528
Normal
-0.2
413
Tumor
-0.2
434
Normal
-0.2
221
Tumor
-0.2
297
Tumor
-0.2
615
Tumor
-0.2
524
Normal
-0.2
416
Normal
-0.2
958
Normal
-0.2
553
Tumor
-0.2
517
Tumor
-0.2
884
Normal
-0.2
967
Tumor
-0.2
435
Tumor
-0.2
147
Tumor
-0.2
617
Tumor
-0.2
913
Tumor
-0.2
285
Tumor
-0.2
137
Tumor
-0.2
271
Tumor
-0.2
785
Tumor
-0.2
571
Tumor
-0.2
188
Normal
-0.3
471
Tumor
-0.3
727
Tumor
-0.3
537
Tumor
-0.3
224
Normal
-0.3
331
Tumor
-0.3
563
Tumor
-0.3
384
Normal
-0.3
877
Tumor
-0.3
367
Tumor
-0.3
465
Tumor
-0.3
493
Tumor
-0.3
131
Tumor
-0.3
921
Tumor
-0.3
487
Tumor
-0.3
192
Normal
-0.4
112
Tumor
-0.4
483
Tumor
-0.4
865
Tumor
-0.4
823
Tumor
-0.4
533
Tumor
-0.4
975
Tumor
-0.4
455
Tumor
-0.4
421
Tumor
-0.5
444
Normal
-0.5
447
Tumor
-0.5
195
Tumor
-0.5
187
Tumor
-0.5
857
Tumor
-0.5
461
Tumor
-0.5
815
Tumor
-0.5
724
Normal
-0.5
427
Tumor
-0.5
965
Tumor
-0.5
817
Tumor
-0.5
641
Tumor
-0.5
161
Tumor
-0.5
185
Tumor
-0.5
491
Tumor
-0.5
445
Tumor
-0.5
883
Tumor
-0.5
881
Tumor
-0.6
813
Tumor
-0.6
425
Tumor
-0.6
443
Tumor
-0.6
365
Tumor
-0.6
411
Tumor
-0.6
917
Tumor
-0.6
523
Tumor
-0.7
125
Tumor
-0.7
685
Tumor
-0.7
463
Tumor
-0.7
497
Tumor
-0.7
814
Normal
-0.7
957
Tumor
-0.7
663
Tumor
-0.7
385
Tumor
-0.7
1021
Tumor
-0.7
647
Tumor
-0.8
567
Tumor
-0.8
467
Tumor
-0.8
393
Tumor
-0.8
527
Tumor
-0.8
737
Tumor
-0.8
513
Tumor
-0.8
1013
Tumor
-0.8
351
Tumor
-0.8
983
Tumor
-0.8
943
Tumor
-0.8
277
Tumor
-0.9
357
Tumor
-0.9
283
Tumor
-0.9
923
Tumor
-0.9
223
Tumor
-0.9
515
Tumor
-0.9
661
Tumor
-0.9
525
Tumor
-0.9
355
Tumor
-1.0
953
Tumor
-1.0
695
Tumor
-1.0
213
Tumor
-1.0
257
Tumor
-1.0
313
Tumor
-1.0
431
Tumor
-1.1
343
Tumor
-1.1
375
Tumor
-1.1
311
Tumor
-1.2
573
Tumor
-1.2
211
Tumor
-1.5
545
Tumor
-1.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
