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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
296.3
nTPM
HPA Brain:
498.8
nTPM
GTEx:
296.3
nTPM
FANTOM5:
2495.1
Scaled Tags Per Million
Mouse:
603.8
nTPM
Allen mouse:
6.5
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
498.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 320.4
2019
Male, age 18, unknown
486.6
1870
Female, age 42, unknown
455.5
2411
Female, age 72, unknown
440.4
1830
Male, age 51, unknown
394.7
1833
Male, age 53, unknown
363.3
2828
Female, age 72, unknown
329.9
2219
Male, age 76, both hemispheres
238.0
1827
Male, age 72, unknown
185.0
2666
Male, age 74, left hemisphere
161.9
2586
Male, age 75, left hemisphere
149.2
Dorsal raphe nucleus nTPM: 299.1
2750
Male, age 76, both hemispheres
610.3
1828
Male, age 53, unknown
259.1
2016
Female, age 72, unknown
243.3
2298
Female, age 72, unknown
205.4
2047
Male, age 72, unknown
177.4
Inferior colliculus nTPM: 223.7
1848
Female, age 42, unknown
246.6
1890
Male, age 53, unknown
240.0
2097
Female, age 72, unknown
230.0
2849
Male, age 72, unknown
178.1
Median raphe nucleus nTPM: 377.4
2220
Male, age 76, midline
377.4
Periaquaductal grey, anterior nTPM: 200.3
2502
Female, age 75, unknown
256.5
1947
Male, age 18, unknown
184.9
1795
Male, age 51, unknown
159.4
Periaquaductal grey, dorsal nTPM: 155.3
2464
Female, age 72, unknown
226.7
1831
Male, age 72, unknown
154.6
2850
Male, age 76, both hemispheres
120.4
1840
Male, age 53, unknown
119.3
Periaquaductal grey, lateral nTPM: 196.1
2272
Male, age 74, both hemispheres
233.9
2053
Male, age 18, unknown
194.3
2140
Male, age 76, both hemispheres
160.1
Pretectal area nTPM: 211.6
2273
Male, age 74, both hemispheres
283.2
2316
Male, age 76, right hemisphere
274.9
1815
Male, age 53, unknown
264.8
2667
Female, age 75, unknown
248.2
1817
Female, age 42, unknown
239.6
2007
Male, age 72, unknown
212.5
2224
Female, age 72, unknown
194.1
2825
Male, age 18, unknown
192.5
2407
Male, age 75, both hemispheres
160.8
1944
Female, age 72, unknown
132.0
1816
Male, age 51, unknown
124.6
Red nucleus nTPM: 498.8
1821
Female, age 72, unknown
659.8
1865
Male, age 51, unknown
641.3
1904
Male, age 53, unknown
602.8
2227
Male, age 72, unknown
592.1
2769
Male, age 72, unknown
583.4
2823
Male, age 76, right hemisphere
583.1
1954
Female, age 42, unknown
548.4
2785
Male, age 18, unknown
500.3
2503
Female, age 72, unknown
476.0
2588
Male, age 74, left hemisphere
299.4
2725
Female, age 75, unknown
272.6
2584
Male, age 75, left hemisphere
227.0
Substantia nigra nTPM: 251.8
1851
Male, age 51, unknown
338.9
2409
Female, age 72, unknown
304.6
1889
Female, age 72, unknown
294.2
2241
Male, age 72, unknown
282.9
2699
Male, age 18, unknown
258.0
1916
Female, age 42, unknown
245.6
2590
Female, age 75, unknown
241.3
2583
Male, age 75, right hemisphere
218.1
1941
Male, age 53, unknown
210.7
2665
Male, age 74, both hemispheres
124.0
Superior colliculus nTPM: 259.9
2587
Male, age 74, left hemisphere
399.0
1913
Female, age 42, unknown
394.1
1995
Male, age 72, unknown
372.3
1895
Male, age 76, right hemisphere
275.2
2668
Female, age 75, unknown
263.9
1839
Male, age 51, unknown
254.8
1796
Male, age 53, unknown
212.7
2087
Female, age 72, unknown
185.8
2261
Male, age 18, unknown
144.8
2664
Male, age 75, both hemispheres
96.0
Ventral tegmental area nTPM: 376.6
2223
Female, age 72, unknown
663.5
2410
Female, age 72, unknown
451.2
2218
Male, age 76, both hemispheres
362.9
2021
Male, age 53, unknown
270.5
1942
Male, age 51, unknown
263.4
1915
Female, age 42, unknown
248.1
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
296.3
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 296.3
Samples: 139
Max nTPM: 1577.2
Min nTPM: 85.7
Std nTPM: 177.0
Median nTPM: 247.2
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
1577.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
841.7
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
787.3
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
723.2
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
718.4
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
643.5
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
607.1
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
561.2
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
547.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
541.7
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
502.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
494.1
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
490.1
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
479.6
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
462.6
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
446.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
444.7
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
438.9
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
436.7
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
429.6
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
427.0
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
424.9
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
416.3
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
407.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
393.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
391.7
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
389.9
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
388.7
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
388.7
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
387.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
386.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
374.2
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
370.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
358.8
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
356.0
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
354.8
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
351.3
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
349.6
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
347.5
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
346.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
345.4
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
339.2
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
337.4
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
332.5
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
332.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
325.0
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
311.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
307.3
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
306.9
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
306.1
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
301.7
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
300.1
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
295.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
294.1
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
282.7
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
279.8
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
276.1
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
273.8
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
271.8
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
264.7
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
261.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
258.4
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
257.7
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
257.3
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
257.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
251.9
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
250.5
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
250.1
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
248.3
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
247.2
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
246.2
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
245.2
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
239.8
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
239.2
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
237.8
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
236.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
233.7
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
233.2
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
232.0
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
228.7
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
228.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
227.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
225.5
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
221.6
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
220.4
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
212.3
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
211.9
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
208.8
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
203.6
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
202.7
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
199.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
197.5
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
195.4
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
194.9
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
194.6
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
194.2
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
194.1
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
194.0
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
193.8
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
192.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
192.0
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
191.6
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
191.2
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
190.8
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
190.2
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
188.9
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
187.3
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
184.5
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
181.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
181.0
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
178.9
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
178.7
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
175.7
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
175.0
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
172.6
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
169.7
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
168.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
167.7
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
164.3
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
162.4
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
159.8
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
159.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
158.0
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
156.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
155.9
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
155.1
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
154.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
153.8
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
149.4
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
148.9
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
147.2
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
146.1
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
137.4
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
136.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
135.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
120.5
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
119.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
117.4
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
85.7
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
603.8
Mouse sample
Sample description
nTPM
Midbrain nTPM: 603.9
Samples: 4
Max nTPM: 639.3
Min nTPM: 562.7
Sample A
Male
586.3
Sample B
Male
562.7
Sample C
Female
639.3
Sample D
Female
627.1
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.