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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Low
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
52.4
nTPM
HPA Brain:
58.3
nTPM
GTEx:
52.4
nTPM
FANTOM5:
42.3
Scaled Tags Per Million
Pig:
29.9
nTPM
Mouse:
37.9
nTPM
Allen mouse:
9.7
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA056913
Glial cells
Low
Neuronal cells
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
58.3
Sample id
Sample description
nTPM
Hippocampus nTPM: 48.0
1898
Male, age 80, left hemisphere
59.8
2621
Female, age 67, right hemisphere
48.8
2148
Female, age 91, left hemisphere
48.5
1855
Male, age 76, left hemisphere
47.6
2529
Female, age 94, left hemisphere
42.8
1911
Female, age 85, right hemisphere
40.5
Dentate gyrus nTPM: 52.4
2530
Female, age 94, left hemisphere
64.9
1927
Female, age 91, both hemispheres
61.2
2246
Female, age 85, both hemispheres
49.5
2531
Female, age 67, both hemispheres
47.4
2010
Male, age 76, both hemispheres
45.9
2528
Male, age 74, both hemispheres
45.3
Entorhinal gyrus nTPM: 54.2
2613
Female, age 94, left hemisphere
68.8
2764
Male, age 80, right hemisphere
63.1
1938
Female, age 85, left hemisphere
58.5
1787
Male, age 76, left hemisphere
54.3
2117
Female, age 91, right hemisphere
41.7
2686
Male, age 75, right hemisphere
38.6
Hippocampus, CA1 nTPM: 49.4
2749
Male, age 80, left hemisphere
68.4
1873
Female, age 85, both hemispheres
47.6
2527
Male, age 74, both hemispheres
47.5
2082
Female, age 91, right hemisphere
43.2
2045
Male, age 76, both hemispheres
40.5
Hippocampus, CA2 nTPM: 49.6
1892
Male, age 76, both hemispheres
57.7
2437
Female, age 94, left hemisphere
52.9
1963
Male, age 80, left hemisphere
52.6
2249
Male, age 74, both hemispheres
47.3
1940
Female, age 85, left hemisphere
44.1
2113
Female, age 91, right hemisphere
43.3
Hippocampus, CA3 nTPM: 49.4
2620
Female, age 94, left hemisphere
60.7
2137
Male, age 80, left hemisphere
56.4
2436
Male, age 74, both hemispheres
51.5
1867
Male, age 76, both hemispheres
44.8
2861
Female, age 67, both hemispheres
44.5
1891
Female, age 85, both hemispheres
38.7
Parahippocampal cortex nTPM: 48.6
1990
Female, age 91, right hemisphere
59.9
1850
Male, age 80, both hemispheres
55.9
2245
Female, age 91, both hemispheres
54.0
2250
Female, age 67, right hemisphere
50.2
1933
Female, age 85, both hemispheres
48.8
2532
Female, age 72, left hemisphere
48.7
2693
Female, age 94, both hemispheres
45.8
2018
Male, age 76, both hemispheres
42.4
2622
Female, age 67, right hemisphere
40.7
2692
Male, age 74, both hemispheres
39.2
Perirhinal gyrus nTPM: 58.3
1847
Female, age 91, left hemisphere
68.9
1794
Male, age 80, right hemisphere
67.3
1841
Female, age 85, right hemisphere
56.5
2521
Female, age 94, right hemisphere
51.0
2848
Male, age 76, right hemisphere
47.6
Subiculum nTPM: 44.9
1977
Female, age 85, both hemispheres
52.8
2619
Male, age 74, both hemispheres
49.4
2438
Female, age 94, left hemisphere
48.3
1901
Male, age 80, both hemispheres
45.8
2729
Female, age 91, right hemisphere
38.1
2042
Male, age 76, both hemispheres
34.6
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
52.4
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 52.4
Samples: 197
Max nTPM: 116.1
Min nTPM: 7.8
Std nTPM: 19.3
Median nTPM: 51.5
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
116.1
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
98.6
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
97.1
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
96.4
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
92.4
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
92.4
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
90.0
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
89.3
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
88.4
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
87.1
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
86.3
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
85.9
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
84.0
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
83.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
82.5
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
81.7
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
81.1
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
80.9
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
80.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
78.6
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
77.2
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
76.5
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
76.2
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
76.1
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
76.1
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
75.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
74.7
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
74.6
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
74.1
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
73.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
73.1
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
73.0
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
71.8
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
71.7
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
71.3
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
71.3
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
71.0
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
70.8
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
69.9
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
68.8
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
68.6
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
68.5
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
68.2
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
66.2
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
66.2
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
66.0
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
65.8
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
65.7
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
64.8
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
64.3
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
64.2
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
63.3
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
63.3
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
63.2
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
63.2
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
63.0
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
62.7
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
62.7
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
62.5
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
62.3
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
61.9
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
61.8
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
61.7
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
61.3
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
60.8
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
60.6
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
59.8
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
59.5
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
59.3
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
58.9
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
58.4
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
58.2
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
58.2
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
58.1
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
57.6
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
57.6
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
57.5
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
57.1
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
56.8
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
56.6
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
56.5
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
56.4
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
56.4
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
56.1
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
55.8
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
55.3
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
55.0
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
54.9
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
54.8
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
53.7
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
53.1
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
53.1
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
52.8
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
52.5
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
52.4
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
52.3
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
51.9
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
51.7
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
51.5
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
51.4
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
51.2
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
51.2
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
51.0
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
50.1
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
49.4
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
49.4
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
49.1
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
48.1
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
48.1
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
48.0
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
47.9
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
47.6
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
47.3
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
47.2
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
46.9
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
46.7
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
46.5
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
46.2
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
46.1
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
45.7
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
45.7
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
45.5
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
44.9
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
44.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
44.1
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
43.8
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
43.1
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
42.9
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
42.8
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
42.6
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
42.2
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
40.2
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
40.0
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
39.8
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
39.5
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
39.5
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
39.4
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
39.3
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
39.3
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
39.0
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
38.7
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
38.6
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
38.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
38.0
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
37.8
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
37.2
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
37.0
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
36.6
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
36.4
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
36.2
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
36.1
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
35.7
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
35.7
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
35.2
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
35.2
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
34.5
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
34.0
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
33.7
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
33.2
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
32.8
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
32.7
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
32.3
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
32.3
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
31.4
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
31.4
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
31.3
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
30.9
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
30.7
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
30.7
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
30.7
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
30.6
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
30.6
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
30.5
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
30.2
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
30.1
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
29.9
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
29.5
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
29.5
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
28.3
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
28.2
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
28.2
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
26.9
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
26.3
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
26.2
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
25.5
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
25.4
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
25.3
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
24.8
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
24.6
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
24.3
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
23.0
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
22.9
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
22.8
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
18.8
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
18.0
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
17.5
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
7.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
37.9
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 37.5
Samples: 4
Max nTPM: 45.3
Min nTPM: 33.2
Sample A
Male
35.8
Sample B
Male
35.7
Sample C
Female
45.3
Sample D
Female
33.2
Hippocampal formation nTPM: 37.9
Samples: 4
Max nTPM: 41.3
Min nTPM: 34.2
Sample A
Male
35.0
Sample B
Male
34.2
Sample C
Female
41.3
Sample D
Female
41.2
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.