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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
0.9
nTPM
HPA Brain:
24.3
nTPM
GTEx:
0.9
nTPM
FANTOM5:
0.0
Scaled Tags Per Million
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
24.3
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 12.5
2219
Male, age 76, both hemispheres
25.0
1827
Male, age 72, unknown
17.6
1830
Male, age 51, unknown
12.6
2666
Male, age 74, left hemisphere
12.6
2828
Female, age 72, unknown
11.1
1870
Female, age 42, unknown
11.0
2411
Female, age 72, unknown
10.8
1833
Male, age 53, unknown
9.7
2019
Male, age 18, unknown
7.8
2586
Male, age 75, left hemisphere
7.1
Dorsal raphe nucleus nTPM: 9.7
2016
Female, age 72, unknown
10.6
2298
Female, age 72, unknown
9.7
2750
Male, age 76, both hemispheres
9.7
2047
Male, age 72, unknown
9.5
1828
Male, age 53, unknown
8.9
Inferior colliculus nTPM: 18.2
2849
Male, age 72, unknown
24.6
1848
Female, age 42, unknown
20.5
2097
Female, age 72, unknown
15.8
1890
Male, age 53, unknown
12.0
Median raphe nucleus nTPM: 9.1
2220
Male, age 76, midline
9.1
Periaquaductal grey, anterior nTPM: 24.3
1947
Male, age 18, unknown
39.8
1795
Male, age 51, unknown
18.1
2502
Female, age 75, unknown
14.9
Periaquaductal grey, dorsal nTPM: 16.1
1840
Male, age 53, unknown
20.0
2464
Female, age 72, unknown
18.7
2850
Male, age 76, both hemispheres
15.0
1831
Male, age 72, unknown
10.6
Periaquaductal grey, lateral nTPM: 17.7
2272
Male, age 74, both hemispheres
18.7
2053
Male, age 18, unknown
17.4
2140
Male, age 76, both hemispheres
16.9
Pretectal area nTPM: 13.3
2316
Male, age 76, right hemisphere
20.0
2825
Male, age 18, unknown
18.5
2273
Male, age 74, both hemispheres
15.4
2407
Male, age 75, both hemispheres
15.4
2667
Female, age 75, unknown
14.2
2224
Female, age 72, unknown
13.8
1816
Male, age 51, unknown
12.2
1944
Female, age 72, unknown
10.8
2007
Male, age 72, unknown
10.4
1815
Male, age 53, unknown
8.5
1817
Female, age 42, unknown
6.9
Red nucleus nTPM: 8.1
2725
Female, age 75, unknown
13.0
2503
Female, age 72, unknown
9.1
2227
Male, age 72, unknown
9.0
1954
Female, age 42, unknown
8.7
2769
Male, age 72, unknown
8.7
2584
Male, age 75, left hemisphere
8.5
2823
Male, age 76, right hemisphere
7.9
1865
Male, age 51, unknown
7.1
2588
Male, age 74, left hemisphere
7.1
2785
Male, age 18, unknown
6.6
1904
Male, age 53, unknown
5.8
1821
Female, age 72, unknown
5.2
Substantia nigra nTPM: 9.9
1941
Male, age 53, unknown
27.9
2409
Female, age 72, unknown
10.3
2241
Male, age 72, unknown
10.1
2590
Female, age 75, unknown
9.9
1889
Female, age 72, unknown
9.6
2665
Male, age 74, both hemispheres
7.6
1916
Female, age 42, unknown
7.1
2583
Male, age 75, right hemisphere
6.2
2699
Male, age 18, unknown
5.4
1851
Male, age 51, unknown
5.0
Superior colliculus nTPM: 14.1
1839
Male, age 51, unknown
22.0
2664
Male, age 75, both hemispheres
20.2
1895
Male, age 76, right hemisphere
18.5
1796
Male, age 53, unknown
14.6
2261
Male, age 18, unknown
14.3
2587
Male, age 74, left hemisphere
13.4
2087
Female, age 72, unknown
11.5
2668
Female, age 75, unknown
9.9
1913
Female, age 42, unknown
9.1
1995
Male, age 72, unknown
8.0
Ventral tegmental area nTPM: 8.9
1942
Male, age 51, unknown
12.0
2223
Female, age 72, unknown
11.5
2218
Male, age 76, both hemispheres
8.9
2021
Male, age 53, unknown
7.4
2410
Female, age 72, unknown
7.3
1915
Female, age 42, unknown
6.4
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.9
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 0.9
Samples: 139
Max nTPM: 13.6
Min nTPM: 0.0
Std nTPM: 1.7
Median nTPM: 0.1
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
13.6
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
7.4
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
7.2
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
6.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
5.5
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
5.2
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
4.2
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
3.4
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
3.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
3.2
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
2.8
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
2.8
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
2.7
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
2.6
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
2.4
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
2.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
2.3
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
2.2
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
2.1
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
2.1
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
2.0
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
1.7
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
1.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
1.7
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
1.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
1.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
1.7
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
1.6
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
1.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
1.5
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
1.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
1.3
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
1.3
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
1.3
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
1.2
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
1.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
1.0
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
0.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
0.9
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
0.6
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
0.5
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
0.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
0.4
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
0.3
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
0.3
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
0.3
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
0.3
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
0.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
0.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
0.2
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
0.2
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
0.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
0.2
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
0.2
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
0.2
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
0.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
0.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
0.2
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
0.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
0.2
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
0.2
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
0.1
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
0.1
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
0.1
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
0.1
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
0.1
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
0.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
0.1
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
0.1
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
0.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
0.1
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
0.1
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
0.1
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
0.1
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
0.1
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
0.1
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
0.1
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
0.1
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
0.1
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
0.1
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
0.1
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
0.1
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
0.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
0.1
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
0.1
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
0.1
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
0.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
0.1
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
0.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
0.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
0.1
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
0.1
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
0.1
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
0.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
0.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
0.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
0.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
0.0
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
0.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
0.0
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
0.0
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
0.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
0.0
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
0.0
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
0.0
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
0.0
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
0.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
0.0
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
0.0
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
0.0
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
0.0
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
0.0
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
0.0
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
0.0
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
0.0
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
0.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
0.0
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
0.0
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
0.0
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
0.0
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
0.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
0.0
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
0.0
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
0.0
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
0.0
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
0.0
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
0.0
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
0.0
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
0.0
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
0.0
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
0.0
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
0.0
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
0.0
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
0.0
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
0.0
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
0.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
0.0
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
0.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
0.0
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.