BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:167.7 nTPM
HPA Brain:94.9 nTPM
GTEx:167.7 nTPM

CAUDATE - Antibody stainingi
Antibody HPA063054
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 94.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 37.3
1857 Female, age 85, left hemisphere 74.9
1854 Male, age 80, left hemisphere 69.5
2846 Female, age 79, unknown 34.7
2290 Female, age 72, unknown 31.2
1781 Male, age 74, unknown 29.8
2289 Male, age 61, right hemisphere 27.1
2481 Female, age 94, left hemisphere 21.2
2288 Male, age 75, left hemisphere 9.8
Globus pallidus, externus
nTPM: 94.9
2646 Male, age 61, right hemisphere 139.3
2567 Female, age 72, unknown 122.2
1996 Male, age 80, right hemisphere 117.2
2395 Male, age 75, both hemispheres 61.3
2772 Female, age 79, unknown 34.3
Globus pallidus, internus
nTPM: 68.2
2037 Male, age 80, right hemisphere 129.3
1818 Male, age 74, unknown 90.9
2566 Female, age 72, unknown 83.9
2111 Female, age 85, right hemisphere 79.2
2778 Female, age 91, both hemispheres 44.4
2287 Male, age 75, right hemisphere 28.2
2483 Female, age 94, right hemisphere 21.8
Nucleus accumbens
nTPM: 60.0
2824 Male, age 61, right hemisphere 108.8
2391 Female, age 94, left hemisphere 96.8
1806 Female, age 85, left hemisphere 76.9
2698 Female, age 72, unknown 54.1
2286 Male, age 75, left hemisphere 44.9
1783 Male, age 74, unknown 33.7
1856 Female, age 91, right hemisphere 32.4
2732 Male, age 80, right hemisphere 31.9
Nucleus basalis of Meynert
nTPM: 75.4
2569 Male, age 61, both hemispheres 173.7
2393 Male, age 80, right hemisphere 74.1
2821 Male, age 75, both hemispheres 36.4
2484 Female, age 94, left hemisphere 17.5
Nucleus of the diagonal band
nTPM: 35.1
2029 Male, age 61, right hemisphere 68.0
1812 Female, age 91, both hemispheres 41.9
2775 Male, age 80, right hemisphere 32.1
2195 Female, age 85, both hemispheres 17.9
1979 Male, age 74, unknown 15.5
Putamen
nTPM: 44.9
2647 Male, age 75, left hemisphere 77.6
1829 Male, age 74, unknown 63.4
1838 Male, age 80, right hemisphere 47.4
2489 Female, age 72, unknown 44.1
1937 Female, age 91, right hemisphere 36.7
2482 Female, age 94, left hemisphere 24.6
2466 Female, age 79, unknown 20.3
Septal nuclei
nTPM: 44.8
2394 Male, age 61, left hemisphere 103.6
2199 Male, age 80, right hemisphere 53.3
2629 Female, age 94, right hemisphere 52.2
2009 Female, age 91, both hemispheres 35.2
2059 Female, age 85, both hemispheres 30.9
2031 Female, age 72, unknown 21.7
1960 Male, age 74, unknown 16.8
Stria terminalis, bed nucleus
nTPM: 17.8
2486 Female, age 94, both hemispheres 22.1
2201 Male, age 74, unknown 19.5
1974 Female, age 91, both hemispheres 11.8

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 167.7
GTEx sample id Sample description nTPM
87.4121.1179.732.6317.6050100150200250300350400450
Brain - Caudate (basal ganglia)
Average nTPM: 143.6
Samples: 246

Max nTPM: 491.5
Min nTPM: 32.6
Std nTPM: 78.9
Median nTPM: 121.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 491.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 483.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 451.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 415.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 388.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 378.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 325.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 325.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 317.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 315.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 313.2
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79.8107.3158.821.1275.5050100150200250300350400450500550600650
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 141.4
Samples: 246

Max nTPM: 667.5
Min nTPM: 21.1
Std nTPM: 99.9
Median nTPM: 107.2
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 667.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 573.0
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 564.1
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 531.1
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 484.6
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 461.2
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 425.8
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 412.9
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 351.0
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 346.8
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 346.4
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101.2151.6212.445.8375.1050100150200250300350400450500
Brain - Putamen (basal ganglia)
Average nTPM: 167.7
Samples: 205

Max nTPM: 539.7
Min nTPM: 45.8
Std nTPM: 87.4
Median nTPM: 151.6
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 539.7
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 498.0
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 452.2
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 413.4
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 389.9
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 375.1
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 367.1
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 365.4
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 363.4
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 339.8
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 338.5
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