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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
High
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
116.0
nTPM
HPA Brain:
292.0
nTPM
GTEx:
116.0
nTPM
FANTOM5:
629.1
Scaled Tags Per Million
Pig:
418.4
nTPM
Mouse:
836.5
nTPM
Allen mouse:
20.1
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA047157
Antibody CAB005610
Glial cells
Not detected
High
Neuronal cells
High
High
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
292.0
Sample id
Sample description
nTPM
Hippocampus nTPM: 229.5
1898
Male, age 80, left hemisphere
279.6
1911
Female, age 85, right hemisphere
278.1
2621
Female, age 67, right hemisphere
276.1
1855
Male, age 76, left hemisphere
192.8
2148
Female, age 91, left hemisphere
192.3
2529
Female, age 94, left hemisphere
158.3
Dentate gyrus nTPM: 223.3
1927
Female, age 91, both hemispheres
332.6
2010
Male, age 76, both hemispheres
217.0
2246
Female, age 85, both hemispheres
216.8
2531
Female, age 67, both hemispheres
198.8
2530
Female, age 94, left hemisphere
197.6
2528
Male, age 74, both hemispheres
176.8
Entorhinal gyrus nTPM: 194.2
1938
Female, age 85, left hemisphere
249.9
2613
Female, age 94, left hemisphere
249.8
2764
Male, age 80, right hemisphere
206.2
1787
Male, age 76, left hemisphere
187.4
2686
Male, age 75, right hemisphere
144.8
2117
Female, age 91, right hemisphere
127.0
Hippocampus, CA1 nTPM: 288.0
2749
Male, age 80, left hemisphere
564.6
1873
Female, age 85, both hemispheres
266.4
2527
Male, age 74, both hemispheres
229.5
2045
Male, age 76, both hemispheres
212.7
2082
Female, age 91, right hemisphere
166.6
Hippocampus, CA2 nTPM: 235.5
1892
Male, age 76, both hemispheres
317.3
1963
Male, age 80, left hemisphere
267.9
2249
Male, age 74, both hemispheres
252.1
1940
Female, age 85, left hemisphere
224.9
2113
Female, age 91, right hemisphere
191.9
2437
Female, age 94, left hemisphere
158.8
Hippocampus, CA3 nTPM: 292.0
2137
Male, age 80, left hemisphere
561.6
1867
Male, age 76, both hemispheres
274.7
2620
Female, age 94, left hemisphere
246.0
2436
Male, age 74, both hemispheres
245.2
2861
Female, age 67, both hemispheres
224.5
1891
Female, age 85, both hemispheres
199.9
Parahippocampal cortex nTPM: 226.7
2245
Female, age 91, both hemispheres
297.2
1850
Male, age 80, both hemispheres
272.9
1990
Female, age 91, right hemisphere
237.0
2622
Female, age 67, right hemisphere
232.6
1933
Female, age 85, both hemispheres
232.2
2250
Female, age 67, right hemisphere
229.7
2532
Female, age 72, left hemisphere
218.3
2693
Female, age 94, both hemispheres
208.8
2018
Male, age 76, both hemispheres
194.4
2692
Male, age 74, both hemispheres
144.3
Perirhinal gyrus nTPM: 278.4
1847
Female, age 91, left hemisphere
339.9
1841
Female, age 85, right hemisphere
306.2
2521
Female, age 94, right hemisphere
282.6
1794
Male, age 80, right hemisphere
255.0
2848
Male, age 76, right hemisphere
208.4
Subiculum nTPM: 195.5
1901
Male, age 80, both hemispheres
304.7
2042
Male, age 76, both hemispheres
201.7
1977
Female, age 85, both hemispheres
193.0
2438
Female, age 94, left hemisphere
175.2
2619
Male, age 74, both hemispheres
152.5
2729
Female, age 91, right hemisphere
146.1
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
116.0
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 116.0
Samples: 197
Max nTPM: 401.0
Min nTPM: 18.7
Std nTPM: 70.0
Median nTPM: 108.8
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
401.0
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
325.0
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
313.7
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
294.9
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
291.3
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
282.4
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
274.3
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
265.6
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
254.1
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
246.1
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
227.3
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
226.7
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
226.5
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
226.4
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
225.3
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
224.2
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
218.5
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
203.8
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
203.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
203.1
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
202.3
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
199.5
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
194.7
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
193.0
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
191.5
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
191.0
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
190.9
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
188.0
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
187.1
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
187.0
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
185.4
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
181.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
174.8
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
173.5
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
172.4
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
171.8
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
171.6
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
171.2
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
171.1
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
171.0
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
167.9
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
167.2
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
166.5
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
166.4
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
165.5
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
165.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
165.0
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
164.0
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
162.9
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
162.0
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
161.4
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
161.3
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
160.9
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
159.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
157.9
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
157.8
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
157.3
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
152.8
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
152.2
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
151.8
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
149.3
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
147.3
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
145.2
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
141.3
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
140.0
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
139.7
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
139.1
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
138.3
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
137.5
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
137.4
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
137.1
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
135.0
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
134.6
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
132.4
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
130.1
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
128.8
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
128.7
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
128.0
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
127.5
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
127.0
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
125.8
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
125.5
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
124.9
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
123.2
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
122.5
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
122.2
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
120.1
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
118.6
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
116.8
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
115.4
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
115.0
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
114.7
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
113.8
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
111.3
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
110.9
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
110.1
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
110.0
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
108.9
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
108.8
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
108.8
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
108.6
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
105.4
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
105.0
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
104.9
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
103.7
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
103.2
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
101.1
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
99.9
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
99.2
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
98.1
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
97.5
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
97.5
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
97.2
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
97.2
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
96.4
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
96.0
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
93.4
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
92.9
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
92.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
91.2
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
89.0
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
87.8
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
86.2
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
83.1
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
82.7
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
81.4
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
78.7
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
78.5
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
78.0
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
78.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
77.9
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
76.1
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
74.7
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
72.6
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
70.6
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
67.9
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
67.0
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
64.8
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
64.2
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
63.6
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
61.5
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
60.2
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
58.7
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
58.0
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
58.0
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
56.9
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
55.0
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
54.2
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
54.0
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
53.9
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
53.4
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
52.8
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
52.3
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
52.2
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
51.8
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
49.1
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
48.2
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
47.5
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
47.3
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
46.3
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
46.3
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
46.2
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
44.6
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
44.6
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
42.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
41.0
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
40.5
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
40.2
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
38.7
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
38.2
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
37.8
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
36.6
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
36.5
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
35.8
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
35.7
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
33.4
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
32.9
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
32.4
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
32.3
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
30.9
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
30.5
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
28.8
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
28.7
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
28.1
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
27.7
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
27.2
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
27.2
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
26.5
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
26.2
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
26.1
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
25.9
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
25.0
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
23.0
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
22.6
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
22.1
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
19.6
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
18.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
836.5
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 628.5
Samples: 4
Max nTPM: 659.9
Min nTPM: 608.9
Sample A
Male
618.6
Sample B
Male
659.9
Sample C
Female
626.7
Sample D
Female
608.9
Hippocampal formation nTPM: 836.5
Samples: 4
Max nTPM: 939.7
Min nTPM: 713.5
Sample A
Male
829.8
Sample B
Male
863.1
Sample C
Female
939.7
Sample D
Female
713.5
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.