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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
150.1
nTPM
HPA Brain:
51.7
nTPM
GTEx:
150.1
nTPM
FANTOM5:
75.4
Scaled Tags Per Million
Pig:
181.9
nTPM
Mouse:
403.1
nTPM
Allen mouse:
21.4
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
51.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 39.9
2219
Male, age 76, both hemispheres
44.6
1833
Male, age 53, unknown
43.9
1827
Male, age 72, unknown
42.8
2019
Male, age 18, unknown
42.5
2828
Female, age 72, unknown
42.3
2586
Male, age 75, left hemisphere
41.9
1870
Female, age 42, unknown
37.5
2411
Female, age 72, unknown
37.5
2666
Male, age 74, left hemisphere
34.7
1830
Male, age 51, unknown
30.8
Dorsal raphe nucleus nTPM: 39.7
2298
Female, age 72, unknown
57.3
1828
Male, age 53, unknown
43.7
2750
Male, age 76, both hemispheres
38.3
2047
Male, age 72, unknown
30.8
2016
Female, age 72, unknown
28.6
Inferior colliculus nTPM: 39.0
2097
Female, age 72, unknown
40.9
2849
Male, age 72, unknown
39.2
1848
Female, age 42, unknown
38.1
1890
Male, age 53, unknown
37.8
Median raphe nucleus nTPM: 42.1
2220
Male, age 76, midline
42.1
Periaquaductal grey, anterior nTPM: 43.3
1795
Male, age 51, unknown
51.4
2502
Female, age 75, unknown
43.4
1947
Male, age 18, unknown
35.2
Periaquaductal grey, dorsal nTPM: 35.9
2464
Female, age 72, unknown
48.8
2850
Male, age 76, both hemispheres
38.6
1831
Male, age 72, unknown
33.0
1840
Male, age 53, unknown
23.3
Periaquaductal grey, lateral nTPM: 29.7
2272
Male, age 74, both hemispheres
33.4
2053
Male, age 18, unknown
29.1
2140
Male, age 76, both hemispheres
26.8
Pretectal area nTPM: 51.7
1816
Male, age 51, unknown
84.9
1815
Male, age 53, unknown
68.3
1817
Female, age 42, unknown
67.5
2007
Male, age 72, unknown
64.4
1944
Female, age 72, unknown
57.5
2667
Female, age 75, unknown
52.1
2224
Female, age 72, unknown
50.8
2825
Male, age 18, unknown
45.4
2407
Male, age 75, both hemispheres
31.3
2316
Male, age 76, right hemisphere
25.5
2273
Male, age 74, both hemispheres
20.5
Red nucleus nTPM: 35.3
1821
Female, age 72, unknown
55.7
2725
Female, age 75, unknown
44.0
2785
Male, age 18, unknown
41.0
1865
Male, age 51, unknown
39.9
2503
Female, age 72, unknown
37.2
1954
Female, age 42, unknown
34.6
2823
Male, age 76, right hemisphere
34.0
2227
Male, age 72, unknown
30.1
2588
Male, age 74, left hemisphere
29.7
1904
Male, age 53, unknown
29.4
2769
Male, age 72, unknown
26.7
2584
Male, age 75, left hemisphere
21.3
Substantia nigra nTPM: 48.8
2241
Male, age 72, unknown
86.2
1941
Male, age 53, unknown
60.4
1889
Female, age 72, unknown
48.5
2665
Male, age 74, both hemispheres
47.3
1916
Female, age 42, unknown
45.3
2583
Male, age 75, right hemisphere
43.4
2699
Male, age 18, unknown
42.0
1851
Male, age 51, unknown
40.7
2409
Female, age 72, unknown
40.5
2590
Female, age 75, unknown
33.9
Superior colliculus nTPM: 41.4
2587
Male, age 74, left hemisphere
57.4
2087
Female, age 72, unknown
55.2
2261
Male, age 18, unknown
46.3
1796
Male, age 53, unknown
42.6
2664
Male, age 75, both hemispheres
40.3
2668
Female, age 75, unknown
39.7
1895
Male, age 76, right hemisphere
37.0
1913
Female, age 42, unknown
35.6
1839
Male, age 51, unknown
31.5
1995
Male, age 72, unknown
28.6
Ventral tegmental area nTPM: 33.1
2218
Male, age 76, both hemispheres
41.9
2223
Female, age 72, unknown
37.2
1915
Female, age 42, unknown
36.9
2410
Female, age 72, unknown
33.9
1942
Male, age 51, unknown
24.8
2021
Male, age 53, unknown
23.8
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
150.1
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 150.1
Samples: 139
Max nTPM: 606.6
Min nTPM: 51.7
Std nTPM: 70.8
Median nTPM: 135.4
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
606.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
418.5
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
329.2
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
301.9
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
299.1
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
293.3
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
286.9
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
266.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
258.3
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
241.0
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
238.0
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
232.4
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
230.8
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
227.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
218.2
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
216.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
214.0
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
209.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
206.2
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
204.9
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
200.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
197.6
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
194.1
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
193.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
190.1
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
186.9
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
183.6
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
183.2
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
181.5
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
180.6
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
180.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
180.6
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
179.5
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
178.9
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
178.8
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
178.0
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
177.4
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
176.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
176.2
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
171.4
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
170.8
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
170.8
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
170.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
169.7
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
169.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
167.1
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
164.8
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
164.7
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
162.4
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
158.2
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
158.2
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
158.0
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
157.0
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
156.7
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
155.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
154.4
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
154.3
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
153.0
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
152.8
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
150.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
150.0
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
149.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
148.6
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
147.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
146.6
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
142.1
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
140.5
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
137.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
135.8
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
135.4
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
135.4
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
133.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
131.2
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
130.5
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
129.5
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
128.7
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
128.1
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
127.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
126.6
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
126.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
125.8
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
124.8
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
124.7
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
124.2
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
123.7
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
121.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
120.2
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
119.9
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
117.9
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
116.2
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
114.1
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
113.4
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
113.0
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
112.1
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
111.7
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
111.4
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
111.3
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
111.1
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
111.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
110.4
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
108.4
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
108.1
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
106.0
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
105.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
105.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
104.9
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
104.8
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
104.1
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
104.0
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
100.5
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
97.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
96.6
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
95.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
94.7
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
93.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
93.6
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
92.1
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
91.8
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
89.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
88.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
88.5
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
86.5
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
84.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
82.3
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
82.3
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
80.7
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
79.2
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
77.4
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
77.0
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
76.8
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
76.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
74.1
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
73.5
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
73.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
69.6
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
68.6
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
59.4
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
55.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
51.7
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
403.1
Mouse sample
Sample description
nTPM
Midbrain nTPM: 403.1
Samples: 4
Max nTPM: 406.5
Min nTPM: 398.4
Sample A
Male
398.4
Sample B
Male
401.1
Sample C
Female
406.4
Sample D
Female
406.5
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.