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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Low
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
234.8
nTPM
HPA Brain:
84.3
nTPM
GTEx:
234.8
nTPM
FANTOM5:
391.1
Scaled Tags Per Million
Pig:
252.3
nTPM
Mouse:
562.9
nTPM
Allen mouse:
26.8
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA068667
Antibody CAB004616
Glial cells
Not detected
Low
Neuronal cells
Medium
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
84.3
Sample id
Sample description
nTPM
Hippocampus nTPM: 66.9
1898
Male, age 80, left hemisphere
114.3
1855
Male, age 76, left hemisphere
92.2
2621
Female, age 67, right hemisphere
67.9
2148
Female, age 91, left hemisphere
61.6
1911
Female, age 85, right hemisphere
42.0
2529
Female, age 94, left hemisphere
23.2
Dentate gyrus nTPM: 59.4
1927
Female, age 91, both hemispheres
82.1
2010
Male, age 76, both hemispheres
66.4
2246
Female, age 85, both hemispheres
65.5
2528
Male, age 74, both hemispheres
54.0
2530
Female, age 94, left hemisphere
51.7
2531
Female, age 67, both hemispheres
36.9
Entorhinal gyrus nTPM: 53.8
1938
Female, age 85, left hemisphere
74.8
2764
Male, age 80, right hemisphere
65.0
1787
Male, age 76, left hemisphere
59.2
2686
Male, age 75, right hemisphere
52.6
2613
Female, age 94, left hemisphere
36.1
2117
Female, age 91, right hemisphere
35.2
Hippocampus, CA1 nTPM: 72.7
2749
Male, age 80, left hemisphere
124.1
1873
Female, age 85, both hemispheres
74.1
2045
Male, age 76, both hemispheres
68.6
2527
Male, age 74, both hemispheres
62.4
2082
Female, age 91, right hemisphere
34.5
Hippocampus, CA2 nTPM: 68.6
1892
Male, age 76, both hemispheres
108.8
1963
Male, age 80, left hemisphere
80.7
2113
Female, age 91, right hemisphere
61.5
2249
Male, age 74, both hemispheres
60.6
1940
Female, age 85, left hemisphere
58.2
2437
Female, age 94, left hemisphere
41.7
Hippocampus, CA3 nTPM: 57.3
2137
Male, age 80, left hemisphere
96.7
1867
Male, age 76, both hemispheres
75.2
1891
Female, age 85, both hemispheres
58.8
2861
Female, age 67, both hemispheres
41.6
2620
Female, age 94, left hemisphere
38.8
2436
Male, age 74, both hemispheres
32.7
Parahippocampal cortex nTPM: 71.8
1850
Male, age 80, both hemispheres
94.0
2250
Female, age 67, right hemisphere
89.0
2532
Female, age 72, left hemisphere
76.7
2245
Female, age 91, both hemispheres
75.2
1933
Female, age 85, both hemispheres
74.6
1990
Female, age 91, right hemisphere
74.2
2693
Female, age 94, both hemispheres
69.3
2018
Male, age 76, both hemispheres
59.8
2692
Male, age 74, both hemispheres
59.5
2622
Female, age 67, right hemisphere
45.3
Perirhinal gyrus nTPM: 84.3
1794
Male, age 80, right hemisphere
91.7
2848
Male, age 76, right hemisphere
84.5
1847
Female, age 91, left hemisphere
83.5
1841
Female, age 85, right hemisphere
81.6
2521
Female, age 94, right hemisphere
80.3
Subiculum nTPM: 41.8
2729
Female, age 91, right hemisphere
65.9
1901
Male, age 80, both hemispheres
65.3
1977
Female, age 85, both hemispheres
47.0
2042
Male, age 76, both hemispheres
37.6
2619
Male, age 74, both hemispheres
25.7
2438
Female, age 94, left hemisphere
9.2
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
234.8
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 234.8
Samples: 197
Max nTPM: 574.2
Min nTPM: 32.0
Std nTPM: 111.4
Median nTPM: 236.3
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
574.2
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
500.5
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
457.6
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
453.4
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
444.0
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
443.5
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
433.2
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
431.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
424.2
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
420.3
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
416.4
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
408.0
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
407.8
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
406.3
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
404.4
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
402.6
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
402.3
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
397.3
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
397.3
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
386.0
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
384.5
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
383.6
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
380.0
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
377.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
377.7
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
377.1
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
374.3
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
372.2
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
371.2
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
368.1
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
367.7
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
366.6
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
362.1
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
361.2
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
357.9
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
357.7
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
345.8
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
345.2
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
341.8
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
339.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
335.8
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
335.6
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
332.2
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
331.9
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
331.7
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
328.5
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
323.5
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
315.7
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
315.5
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
311.5
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
310.0
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
309.6
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
309.3
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
307.6
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
306.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
303.0
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
299.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
299.1
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
295.9
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
293.1
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
290.7
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
289.8
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
289.5
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
289.0
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
288.8
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
284.4
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
281.2
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
280.9
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
278.3
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
278.2
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
277.2
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
276.9
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
275.9
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
272.8
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
272.4
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
271.4
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
269.6
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
268.5
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
267.2
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
267.0
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
260.9
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
257.7
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
254.6
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
252.8
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
250.7
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
250.3
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
248.7
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
248.2
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
245.1
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
244.0
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
243.5
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
242.6
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
239.2
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
238.5
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
237.6
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
237.1
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
236.6
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
236.3
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
236.3
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
235.7
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
235.2
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
234.6
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
234.6
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
230.9
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
226.5
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
225.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
225.5
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
225.0
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
223.1
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
215.3
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
213.9
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
213.7
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
212.2
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
210.9
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
209.8
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
201.8
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
200.1
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
197.0
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
192.6
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
185.0
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
182.3
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
181.8
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
179.7
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
179.2
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
175.1
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
174.1
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
169.7
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
167.7
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
165.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
165.0
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
164.5
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
162.1
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
161.9
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
161.3
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
158.7
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
155.4
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
154.9
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
153.8
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
151.9
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
151.4
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
150.1
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
149.6
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
148.5
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
146.4
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
141.4
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
141.1
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
140.7
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
139.5
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
137.9
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
137.7
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
137.1
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
135.5
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
134.5
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
132.9
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
132.5
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
126.8
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
125.6
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
120.7
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
120.4
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
119.3
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
116.7
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
116.7
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
115.4
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
114.9
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
114.5
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
111.1
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
108.2
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
106.3
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
106.0
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
103.8
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
103.2
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
99.2
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
96.2
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
93.9
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
93.1
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
92.6
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
92.3
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
91.1
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
88.2
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
87.7
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
86.5
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
86.2
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
83.9
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
81.6
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
78.0
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
75.2
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
73.9
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
72.2
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
70.0
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
69.6
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
67.7
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
65.7
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
65.5
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
65.2
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
63.2
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
46.2
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
32.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
562.9
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 516.8
Samples: 4
Max nTPM: 531.8
Min nTPM: 487.0
Sample A
Male
487.0
Sample B
Male
530.9
Sample C
Female
517.5
Sample D
Female
531.8
Hippocampal formation nTPM: 562.9
Samples: 4
Max nTPM: 601.6
Min nTPM: 523.0
Sample A
Male
601.6
Sample B
Male
558.9
Sample C
Female
568.1
Sample D
Female
523.0
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.