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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Low
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
129.5
nTPM
HPA Brain:
156.1
nTPM
GTEx:
129.5
nTPM
FANTOM5:
182.4
Scaled Tags Per Million
Pig:
209.8
nTPM
Mouse:
477.4
nTPM
Allen mouse:
18.9
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA030780
Antibody CAB005885
Antibody CAB072343
Glial cells
Not detected
High
Not detected
Neuronal cells
Medium
High
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
156.1
Sample id
Sample description
nTPM
Hippocampus nTPM: 125.5
1898
Male, age 80, left hemisphere
171.1
1855
Male, age 76, left hemisphere
131.0
2621
Female, age 67, right hemisphere
124.8
2529
Female, age 94, left hemisphere
112.9
2148
Female, age 91, left hemisphere
108.0
1911
Female, age 85, right hemisphere
105.3
Dentate gyrus nTPM: 127.6
1927
Female, age 91, both hemispheres
156.3
2010
Male, age 76, both hemispheres
151.2
2246
Female, age 85, both hemispheres
129.5
2530
Female, age 94, left hemisphere
120.6
2528
Male, age 74, both hemispheres
113.0
2531
Female, age 67, both hemispheres
94.7
Entorhinal gyrus nTPM: 113.5
2764
Male, age 80, right hemisphere
131.9
1938
Female, age 85, left hemisphere
129.2
1787
Male, age 76, left hemisphere
118.0
2613
Female, age 94, left hemisphere
106.6
2117
Female, age 91, right hemisphere
102.0
2686
Male, age 75, right hemisphere
93.6
Hippocampus, CA1 nTPM: 148.0
2749
Male, age 80, left hemisphere
231.8
1873
Female, age 85, both hemispheres
138.8
2045
Male, age 76, both hemispheres
134.9
2527
Male, age 74, both hemispheres
129.1
2082
Female, age 91, right hemisphere
105.2
Hippocampus, CA2 nTPM: 136.7
1892
Male, age 76, both hemispheres
173.0
1963
Male, age 80, left hemisphere
164.3
2249
Male, age 74, both hemispheres
149.8
1940
Female, age 85, left hemisphere
122.5
2113
Female, age 91, right hemisphere
106.3
2437
Female, age 94, left hemisphere
104.2
Hippocampus, CA3 nTPM: 137.0
2436
Male, age 74, both hemispheres
182.5
2137
Male, age 80, left hemisphere
174.8
1867
Male, age 76, both hemispheres
144.1
2620
Female, age 94, left hemisphere
117.2
1891
Female, age 85, both hemispheres
110.2
2861
Female, age 67, both hemispheres
93.3
Parahippocampal cortex nTPM: 129.0
1850
Male, age 80, both hemispheres
160.4
2245
Female, age 91, both hemispheres
151.0
2250
Female, age 67, right hemisphere
145.0
1990
Female, age 91, right hemisphere
133.1
1933
Female, age 85, both hemispheres
132.6
2018
Male, age 76, both hemispheres
130.8
2532
Female, age 72, left hemisphere
127.9
2693
Female, age 94, both hemispheres
113.6
2692
Male, age 74, both hemispheres
101.1
2622
Female, age 67, right hemisphere
94.2
Perirhinal gyrus nTPM: 156.1
1847
Female, age 91, left hemisphere
187.0
1794
Male, age 80, right hemisphere
166.0
1841
Female, age 85, right hemisphere
161.9
2521
Female, age 94, right hemisphere
144.9
2848
Male, age 76, right hemisphere
120.4
Subiculum nTPM: 114.6
1901
Male, age 80, both hemispheres
133.7
1977
Female, age 85, both hemispheres
133.2
2438
Female, age 94, left hemisphere
111.1
2619
Male, age 74, both hemispheres
108.4
2042
Male, age 76, both hemispheres
105.9
2729
Female, age 91, right hemisphere
95.0
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
129.5
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 129.5
Samples: 197
Max nTPM: 287.4
Min nTPM: 50.9
Std nTPM: 51.1
Median nTPM: 123.2
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
287.4
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
264.4
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
239.5
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
234.6
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
232.2
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
229.2
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
226.2
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
223.2
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
218.8
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
218.4
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
218.1
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
217.2
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
216.8
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
216.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
215.2
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
214.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
214.5
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
214.3
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
210.1
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
209.6
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
207.6
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
206.3
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
203.3
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
201.9
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
201.7
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
201.4
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
197.2
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
196.2
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
194.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
194.6
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
193.2
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
190.9
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
187.4
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
185.4
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
184.9
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
183.2
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
181.5
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
180.3
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
179.6
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
178.7
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
176.9
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
174.1
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
170.5
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
170.3
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
170.2
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
169.4
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
167.1
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
166.5
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
164.7
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
164.3
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
162.6
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
162.1
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
161.3
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
155.6
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
155.3
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
155.0
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
154.3
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
153.2
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
150.7
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
150.7
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
148.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
147.8
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
146.6
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
146.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
144.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
144.6
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
144.4
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
144.1
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
143.5
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
142.7
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
142.2
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
141.8
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
141.5
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
141.5
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
141.0
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
140.3
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
139.0
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
138.3
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
138.2
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
138.1
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
137.7
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
136.5
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
136.5
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
136.1
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
134.6
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
133.3
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
133.1
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
132.9
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
132.0
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
131.7
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
128.6
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
127.8
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
127.4
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
126.3
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
125.7
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
124.9
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
124.0
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
123.9
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
123.2
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
122.2
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
121.6
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
121.5
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
117.6
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
117.6
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
116.1
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
116.0
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
115.9
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
115.5
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
115.2
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
115.2
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
114.2
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
111.5
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
110.9
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
110.7
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
110.4
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
110.0
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
109.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
108.2
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
107.9
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
107.4
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
107.0
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
107.0
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
106.0
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
104.3
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
103.0
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
102.7
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
102.1
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
101.1
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
101.0
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
100.9
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
100.1
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
99.3
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
97.8
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
97.7
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
96.2
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
95.2
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
95.2
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
93.4
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
92.7
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
92.1
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
91.9
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
91.4
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
90.9
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
90.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
89.4
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
89.2
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
89.0
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
89.0
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
88.1
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
87.4
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
84.9
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
84.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
84.0
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
81.8
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
81.5
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
80.3
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
80.2
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
79.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
79.3
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
78.8
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
78.2
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
77.5
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
77.1
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
76.1
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
75.0
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
74.8
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
74.5
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
74.2
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
73.2
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
72.9
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
72.0
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
71.4
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
71.3
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
70.5
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
68.8
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
68.6
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
67.4
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
67.0
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
66.7
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
65.6
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
65.5
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
65.4
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
65.3
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
65.1
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
65.0
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
63.4
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
60.2
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
57.3
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
57.3
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
56.8
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
56.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
55.9
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
54.9
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
54.3
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
54.0
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
52.4
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
50.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
477.4
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 466.6
Samples: 4
Max nTPM: 516.0
Min nTPM: 438.0
Sample A
Male
451.9
Sample B
Male
460.5
Sample C
Female
438.0
Sample D
Female
516.0
Hippocampal formation nTPM: 477.4
Samples: 4
Max nTPM: 495.9
Min nTPM: 457.6
Sample A
Male
495.9
Sample B
Male
484.2
Sample C
Female
471.9
Sample D
Female
457.6
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.