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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
169.2
nTPM
HPA Brain:
10.9
nTPM
GTEx:
169.2
nTPM
FANTOM5:
582.4
Scaled Tags Per Million
Pig:
32.4
nTPM
Mouse:
0.0
nTPM
Allen mouse:
0.1
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
10.9
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 1.4
2219
Male, age 76, both hemispheres
2.3
1830
Male, age 51, unknown
2.0
2666
Male, age 74, left hemisphere
2.0
2411
Female, age 72, unknown
1.5
2828
Female, age 72, unknown
1.5
1870
Female, age 42, unknown
1.4
2019
Male, age 18, unknown
1.4
2586
Male, age 75, left hemisphere
0.9
1833
Male, age 53, unknown
0.8
1827
Male, age 72, unknown
0.4
Dorsal raphe nucleus nTPM: 1.4
2016
Female, age 72, unknown
2.1
2298
Female, age 72, unknown
1.7
2750
Male, age 76, both hemispheres
1.6
1828
Male, age 53, unknown
0.8
2047
Male, age 72, unknown
0.7
Inferior colliculus nTPM: 1.1
1848
Female, age 42, unknown
1.5
2097
Female, age 72, unknown
1.5
1890
Male, age 53, unknown
0.9
2849
Male, age 72, unknown
0.7
Median raphe nucleus nTPM: 1.8
2220
Male, age 76, midline
1.8
Periaquaductal grey, anterior nTPM: 1.6
1795
Male, age 51, unknown
2.2
2502
Female, age 75, unknown
1.4
1947
Male, age 18, unknown
1.1
Periaquaductal grey, dorsal nTPM: 2.3
1831
Male, age 72, unknown
4.6
2850
Male, age 76, both hemispheres
2.7
2464
Female, age 72, unknown
1.3
1840
Male, age 53, unknown
0.6
Periaquaductal grey, lateral nTPM: 3.4
2272
Male, age 74, both hemispheres
4.6
2053
Male, age 18, unknown
3.3
2140
Male, age 76, both hemispheres
2.4
Pretectal area nTPM: 1.7
2273
Male, age 74, both hemispheres
4.2
2316
Male, age 76, right hemisphere
3.4
2224
Female, age 72, unknown
1.7
1944
Female, age 72, unknown
1.6
2825
Male, age 18, unknown
1.5
1817
Female, age 42, unknown
1.4
2667
Female, age 75, unknown
1.4
2407
Male, age 75, both hemispheres
1.3
1815
Male, age 53, unknown
0.9
2007
Male, age 72, unknown
0.9
1816
Male, age 51, unknown
0.0
Red nucleus nTPM: 1.4
1865
Male, age 51, unknown
3.3
1954
Female, age 42, unknown
1.9
2725
Female, age 75, unknown
1.9
1821
Female, age 72, unknown
1.4
2227
Male, age 72, unknown
1.3
2503
Female, age 72, unknown
1.3
2769
Male, age 72, unknown
1.3
2823
Male, age 76, right hemisphere
1.3
2785
Male, age 18, unknown
1.2
2584
Male, age 75, left hemisphere
0.9
1904
Male, age 53, unknown
0.8
2588
Male, age 74, left hemisphere
0.4
Substantia nigra nTPM: 2.5
2699
Male, age 18, unknown
6.9
2665
Male, age 74, both hemispheres
4.5
1851
Male, age 51, unknown
3.0
2241
Male, age 72, unknown
2.5
1916
Female, age 42, unknown
1.7
1889
Female, age 72, unknown
1.4
2583
Male, age 75, right hemisphere
1.4
2590
Female, age 75, unknown
1.4
2409
Female, age 72, unknown
1.3
1941
Male, age 53, unknown
0.6
Superior colliculus nTPM: 1.7
2587
Male, age 74, left hemisphere
4.3
1995
Male, age 72, unknown
3.4
1913
Female, age 42, unknown
1.7
2668
Female, age 75, unknown
1.7
2087
Female, age 72, unknown
1.6
1796
Male, age 53, unknown
1.4
1839
Male, age 51, unknown
1.3
2664
Male, age 75, both hemispheres
1.1
1895
Male, age 76, right hemisphere
0.7
2261
Male, age 18, unknown
0.2
Ventral tegmental area nTPM: 10.9
2021
Male, age 53, unknown
55.8
1942
Male, age 51, unknown
2.6
2218
Male, age 76, both hemispheres
2.2
1915
Female, age 42, unknown
1.5
2223
Female, age 72, unknown
1.5
2410
Female, age 72, unknown
1.5
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
169.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 169.2
Samples: 139
Max nTPM: 731.9
Min nTPM: 17.8
Std nTPM: 129.8
Median nTPM: 132.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
731.9
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
551.9
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
504.3
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
489.9
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
451.5
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
425.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
418.5
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
413.7
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
395.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
375.3
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
358.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
357.5
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
357.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
355.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
353.4
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
351.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
343.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
339.6
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
337.9
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
328.7
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
322.6
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
322.3
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
315.8
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
315.4
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
309.4
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
293.2
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
284.2
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
279.6
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
278.4
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
272.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
269.3
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
267.1
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
263.7
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
235.4
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
222.2
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
220.0
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
219.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
218.5
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
216.2
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
215.9
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
211.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
205.3
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
199.9
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
189.9
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
189.7
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
186.9
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
183.7
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
183.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
183.0
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
182.0
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
181.3
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
178.7
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
178.3
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
175.5
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
171.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
171.1
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
170.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
170.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
161.9
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
158.6
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
158.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
155.0
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
152.7
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
147.4
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
145.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
145.0
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
144.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
143.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
135.2
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
132.1
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
130.9
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
130.6
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
129.4
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
129.4
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
128.2
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
127.0
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
124.0
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
120.1
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
117.0
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
116.7
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
110.7
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
106.8
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
103.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
102.6
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
100.5
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
95.2
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
95.0
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
94.7
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
90.7
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
89.3
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
88.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
88.3
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
88.2
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
88.1
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
86.5
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
86.1
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
85.4
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
82.5
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
77.0
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
72.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
71.9
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
67.9
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
66.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
63.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
61.4
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
61.3
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
60.3
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
60.0
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
59.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
58.9
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
56.8
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
55.9
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
52.8
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
52.7
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
52.0
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
51.9
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
51.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
50.6
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
50.4
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
47.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
42.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
41.8
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
39.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
37.3
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
37.2
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
35.6
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
33.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
33.6
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
33.5
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
32.0
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
31.8
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
30.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
29.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
29.1
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
28.5
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
25.4
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
21.7
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
19.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
17.8
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.0
Mouse sample
Sample description
nTPM
Midbrain nTPM: 0.0
Samples: 4
Max nTPM: 0.0
Min nTPM: 0.0
Sample A
Male
0.0
Sample B
Male
0.0
Sample C
Female
0.0
Sample D
Female
0.0
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.