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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Low
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
96.9
nTPM
HPA Brain:
1.7
nTPM
GTEx:
96.9
nTPM
FANTOM5:
351.1
Scaled Tags Per Million
Pig:
11.0
nTPM
Mouse:
0.0
nTPM
Allen mouse:
0.0
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA050162
Antibody HPA053176
Antibody CAB002798
Antibody CAB015402
Glial cells
Not detected
Not detected
Medium
Medium
Neuronal cells
Not detected
Not detected
Not detected
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1.7
Sample id
Sample description
nTPM
Hippocampus nTPM: 1.5
1855
Male, age 76, left hemisphere
2.7
1898
Male, age 80, left hemisphere
1.9
2148
Female, age 91, left hemisphere
1.3
2529
Female, age 94, left hemisphere
1.0
2621
Female, age 67, right hemisphere
1.0
1911
Female, age 85, right hemisphere
0.9
Dentate gyrus nTPM: 1.7
2010
Male, age 76, both hemispheres
4.5
1927
Female, age 91, both hemispheres
1.4
2528
Male, age 74, both hemispheres
1.4
2530
Female, age 94, left hemisphere
1.2
2246
Female, age 85, both hemispheres
0.9
2531
Female, age 67, both hemispheres
0.9
Entorhinal gyrus nTPM: 1.3
1787
Male, age 76, left hemisphere
2.2
2764
Male, age 80, right hemisphere
1.9
2117
Female, age 91, right hemisphere
1.3
2613
Female, age 94, left hemisphere
1.2
2686
Male, age 75, right hemisphere
0.9
1938
Female, age 85, left hemisphere
0.3
Hippocampus, CA1 nTPM: 1.6
2045
Male, age 76, both hemispheres
2.8
2749
Male, age 80, left hemisphere
1.7
2082
Female, age 91, right hemisphere
1.6
1873
Female, age 85, both hemispheres
1.3
2527
Male, age 74, both hemispheres
0.6
Hippocampus, CA2 nTPM: 1.7
1940
Female, age 85, left hemisphere
2.9
1892
Male, age 76, both hemispheres
1.8
2113
Female, age 91, right hemisphere
1.7
1963
Male, age 80, left hemisphere
1.4
2249
Male, age 74, both hemispheres
1.1
2437
Female, age 94, left hemisphere
1.0
Hippocampus, CA3 nTPM: 1.5
1867
Male, age 76, both hemispheres
2.9
2137
Male, age 80, left hemisphere
1.7
2861
Female, age 67, both hemispheres
1.4
2620
Female, age 94, left hemisphere
1.1
2436
Male, age 74, both hemispheres
1.0
1891
Female, age 85, both hemispheres
0.8
Parahippocampal cortex nTPM: 1.3
2018
Male, age 76, both hemispheres
4.2
1850
Male, age 80, both hemispheres
1.9
1990
Female, age 91, right hemisphere
1.5
2245
Female, age 91, both hemispheres
1.3
2532
Female, age 72, left hemisphere
1.3
2250
Female, age 67, right hemisphere
1.1
2693
Female, age 94, both hemispheres
1.0
2622
Female, age 67, right hemisphere
0.9
2692
Male, age 74, both hemispheres
0.1
1933
Female, age 85, both hemispheres
0.0
Perirhinal gyrus nTPM: 1.2
1794
Male, age 80, right hemisphere
2.1
1847
Female, age 91, left hemisphere
1.3
1841
Female, age 85, right hemisphere
1.0
2521
Female, age 94, right hemisphere
1.0
2848
Male, age 76, right hemisphere
0.9
Subiculum nTPM: 1.7
2042
Male, age 76, both hemispheres
4.2
2729
Female, age 91, right hemisphere
1.8
1901
Male, age 80, both hemispheres
1.4
2438
Female, age 94, left hemisphere
1.0
2619
Male, age 74, both hemispheres
0.9
1977
Female, age 85, both hemispheres
0.7
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
96.9
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 96.9
Samples: 197
Max nTPM: 437.9
Min nTPM: 7.8
Std nTPM: 82.4
Median nTPM: 73.9
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
437.9
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
392.5
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
367.9
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
365.0
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
344.3
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
337.6
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
322.4
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
308.9
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
288.6
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
284.4
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
276.4
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
257.5
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
250.1
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
249.7
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
239.2
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
229.0
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
227.2
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
213.5
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
212.9
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
208.5
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
206.9
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
202.5
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
195.8
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
191.8
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
188.5
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
187.9
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
185.8
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
180.1
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
178.7
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
178.3
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
172.3
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
171.6
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
162.9
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
162.1
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
159.3
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
157.9
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
153.2
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
151.6
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
151.3
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
150.3
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
146.6
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
145.0
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
145.0
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
139.9
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
137.2
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
131.5
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
127.6
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
127.4
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
125.7
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
123.1
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
122.7
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
117.9
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
115.4
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
111.4
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
111.3
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
111.2
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
108.6
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
108.3
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
107.4
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
105.7
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
105.5
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
105.1
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
105.0
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
103.6
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
103.6
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
99.0
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
98.2
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
97.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
96.9
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
95.8
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
94.8
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
94.0
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
93.7
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
91.8
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
90.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
90.4
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
89.7
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
89.4
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
89.3
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
87.1
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
86.9
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
86.7
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
86.2
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
86.2
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
85.5
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
85.2
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
85.1
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
81.2
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
80.2
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
79.7
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
79.5
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
78.7
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
77.4
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
77.3
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
75.4
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
75.0
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
74.5
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
74.1
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
73.9
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
73.6
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
71.5
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
71.1
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
71.0
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
70.7
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
69.2
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
68.9
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
67.7
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
67.2
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
66.7
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
65.3
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
63.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
62.9
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
62.0
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
61.6
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
61.5
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
61.2
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
59.8
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
59.8
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
59.1
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
56.7
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
56.3
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
56.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
56.1
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
56.1
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
55.4
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
54.7
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
52.7
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
52.2
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
50.8
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
49.5
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
47.7
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
44.6
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
43.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
43.5
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
42.0
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
41.8
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
40.8
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
40.2
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
39.7
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
39.5
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
39.3
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
38.3
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
37.9
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
37.0
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
36.9
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
36.8
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
36.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
36.6
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
36.4
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
36.3
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
36.3
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
35.8
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
34.9
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
34.9
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
34.8
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
34.3
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
33.8
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
33.4
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
33.2
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
32.6
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
32.4
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
30.4
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
30.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
30.0
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
29.8
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
28.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
28.1
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
27.9
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
27.7
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
27.7
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
27.6
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
27.1
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
26.5
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
26.0
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
25.0
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
22.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
22.7
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
22.1
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
21.9
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
21.9
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
20.9
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
20.7
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
20.1
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
19.8
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
19.2
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
18.9
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
18.4
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
18.0
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
17.9
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
16.3
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
15.7
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
14.9
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
12.5
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
11.5
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
10.4
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
10.3
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
7.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.0
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 0.0
Samples: 4
Max nTPM: 0.0
Min nTPM: 0.0
Sample A
Male
0.0
Sample B
Male
0.0
Sample C
Female
0.0
Sample D
Female
0.0
Hippocampal formation nTPM: 0.0
Samples: 4
Max nTPM: 0.0
Min nTPM: 0.0
Sample A
Male
0.0
Sample B
Male
0.0
Sample C
Female
0.0
Sample D
Female
0.0
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.