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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MT-ND1 is not prognostic in Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: 1.96
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
0.20
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
62%
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
76%
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3219.1
Number of samples
283
Samples
Sample
Description
TPM
TCGA-IR-A3LF-01A
64 years, female, white, stage:Stage IB, alive, 2949 days
13316.7
TCGA-C5-A2LS-01A
37 years, female, white, stage:Stage IB, alive, 1345 days
12286.1
TCGA-IR-A3LI-01A
48 years, female, white, stage:Stage IVB, alive, 2493 days
12230.6
TCGA-EK-A2RN-01A
45 years, female, white, stage:Stage IB, alive, 71 days
12047.7
TCGA-C5-A8YQ-01A
79 years, female, white, stage:Stage IB, dead, 715 days
11481.1
TCGA-VS-A8QH-01A
76 years, female, white, stage:Stage IB, dead, 1210 days
11357.7
TCGA-IR-A3LB-01A
53 years, female, white, stage:Stage IB, dead, 2032 days
10541.4
TCGA-C5-A7CO-01A
68 years, female, white, stage:Stage IB, alive, 4482 days
10124.5
TCGA-EK-A2GZ-01A
64 years, female, black or african american, stage:Stage IIIB, alive, 383 days
9319.2
TCGA-XS-A8TJ-01A
41 years, female, black or african american, stage:Stage IB, alive, 890 days
9017.0
TCGA-ZX-AA5X-01A
64 years, female, white, stage:Stage IIIB, alive, 119 days
8864.2
TCGA-DR-A0ZL-01A
53 years, female, asian, stage:Stage IB, alive, 2669 days
8337.1
TCGA-C5-A7CK-01A
58 years, female, white, stage:Stage IVA, dead, 4086 days
7981.6
TCGA-VS-A8Q9-01A
79 years, female, white, stage:Stage IB, alive, 1630 days
7965.1
TCGA-EK-A3GN-01A
47 years, female, white, stage:Stage IIIB, alive, 27 days
7748.4
TCGA-VS-A952-01A
66 years, female, white, stage:Stage IB, alive, 1778 days
7134.0
TCGA-PN-A8MA-01A
43 years, female, black or african american, stage:Stage IIB, alive, 90 days
7005.6
TCGA-Q1-A5R1-01A
32 years, female, white, stage:Stage IB, alive, 474 days
6944.3
TCGA-VS-A9V0-01A
58 years, female, stage:Stage IB, alive, 573 days
6875.4
TCGA-VS-A9UZ-01A
61 years, female, white, stage:Stage IB, alive, 2044 days
6772.6
TCGA-JW-A5VJ-01A
56 years, female, american indian or alaska native, stage:Stage IIB, alive, 652 days
6488.0
TCGA-VS-A9V5-01A
50 years, female, white, stage:Stage IIB, dead, 494 days
6425.3
TCGA-JW-A69B-01A
44 years, female, white, stage:Stage IB, alive, 863 days
6348.5
TCGA-FU-A40J-01A
38 years, female, white, stage:Stage IIIB, alive, 426 days
6274.5
TCGA-C5-A8XH-01A
39 years, female, white, stage:Stage IB, dead, 1394 days
6203.6
TCGA-EK-A2PG-01A
88 years, female, black or african american, stage:'--, alive, 46 days
6103.0
TCGA-EA-A556-01A
38 years, female, white, stage:Stage IB, alive, 453 days
5982.5
TCGA-FU-A770-01A
33 years, female, white, stage:Stage IIIB, alive, 34 days
5931.9
TCGA-VS-A9UO-01A
43 years, female, white, stage:Stage IIB, alive, 1456 days
5894.8
TCGA-FU-A57G-01A
49 years, female, white, stage:Stage IB, alive, 1078 days
5860.3
TCGA-ZJ-A8QR-01A
38 years, female, native hawaiian or other pacific islander, stage:Stage I, dead, 582 days
5752.3
TCGA-VS-A9U5-01A
57 years, female, white, stage:Stage IIB, alive, 1535 days
5665.0
TCGA-FU-A23L-01A
60 years, female, white, stage:Stage IIA, alive, 725 days
5560.1
TCGA-VS-A8EK-01A
65 years, female, white, stage:Stage IVA, dead, 829 days
5437.0
TCGA-EA-A411-01A
50 years, female, white, stage:Stage IB, alive, 747 days
5419.5
TCGA-C5-A8YR-01A
56 years, female, white, stage:Stage IB, dead, 837 days
5347.8
TCGA-MA-AA3X-01A
50 years, female, black or african american, stage:Stage IIIB, alive, 617 days
5304.1
TCGA-EK-A2IR-01A
48 years, female, white, stage:Stage IB, alive, 3442 days
5289.5
TCGA-C5-A7X8-01A
35 years, female, white, stage:Stage IB, alive, 83 days
5278.0
TCGA-VS-A9V2-01A
29 years, female, white, stage:Stage IB, alive, 555 days
5276.0
TCGA-VS-A957-01A
64 years, female, white, stage:Stage IB, alive, 1688 days
5271.0
TCGA-Q1-A6DV-01A
36 years, female, asian, stage:Stage IB, alive, 491 days
5192.9
TCGA-EA-A439-01A
50 years, female, asian, stage:Stage IIA, alive, 965 days
5061.6
TCGA-VS-A8QF-01A
42 years, female, white, stage:Stage IIB, alive, 1800 days
4874.3
TCGA-DS-A3LQ-01A
46 years, female, stage:Stage IIIB, alive, 699 days
4823.9
TCGA-C5-A7CG-01A
55 years, female, white, stage:Stage IB, alive, 6408 days
4815.7
TCGA-RA-A741-01A
34 years, female, white, stage:Stage IIB, alive, 444 days
4783.8
TCGA-BI-A20A-01A
49 years, female, white, stage:Stage IB, alive, 720 days
4723.1
TCGA-EA-A44S-01A
31 years, female, white, stage:Stage IIIB, alive, 369 days
4638.4
TCGA-IR-A3LA-01A
60 years, female, white, stage:Stage IB, alive, 4172 days
4589.8
TCGA-Q1-A73P-01A
45 years, female, white, stage:Stage IB, alive, 483 days
4560.9
TCGA-VS-A9UV-01A
74 years, female, stage:Stage IVA, dead, 104 days
4446.2
TCGA-EK-A2PK-01A
43 years, female, white, stage:Stage IB, alive, 12 days
4402.7
TCGA-EX-A69M-01A
62 years, female, white, stage:Stage IB, dead, 253 days
4396.0
TCGA-C5-A7CM-01A
35 years, female, white, stage:Stage IB, alive, 619 days
4358.5
TCGA-C5-A8YT-01A
36 years, female, white, stage:Stage IB, dead, 633 days
4326.3
TCGA-C5-A7XC-01A
26 years, female, white, stage:Stage IB, alive, 1551 days
4322.3
TCGA-C5-A1BL-01A
32 years, female, white, stage:Stage IB, alive, 5271 days
4294.8
TCGA-VS-A9V1-01A
46 years, female, white, stage:Stage IVB, dead, 157 days
4283.5
TCGA-C5-A2M2-01A
56 years, female, white, stage:Stage IB, dead, 1011 days
4226.3
TCGA-EK-A2PI-01A
44 years, female, white, stage:Stage IIIB, alive, 586 days
4178.9
TCGA-DS-A7WH-01A
34 years, female, white, stage:Stage IB, alive, 533 days
4171.1
TCGA-IR-A3L7-01A
37 years, female, white, stage:Stage IB, alive, 4483 days
4160.2
TCGA-Q1-A73Q-01A
46 years, female, white, stage:Stage I, alive, 284 days
4158.1
TCGA-LP-A4AU-01A
35 years, female, asian, stage:Stage IIIB, alive, 343 days
4138.0
TCGA-VS-A9UT-01A
72 years, female, asian, stage:Stage IB, alive, 482 days
4082.5
TCGA-EK-A2PL-01A
36 years, female, white, stage:Stage IIIB, alive, 13 days
4076.0
TCGA-DS-A1OA-01A
77 years, female, asian, stage:Stage IB, dead, 879 days
4070.4
TCGA-MU-A5YI-01A
60 years, female, black or african american, stage:Stage IA, alive, 1053 days
4056.1
TCGA-VS-A8QM-01A
47 years, female, stage:Stage IVB, dead, 951 days
4049.1
TCGA-VS-A9UB-01A
54 years, female, stage:Stage IIB, alive, 911 days
4048.5
TCGA-EK-A2R9-01A
58 years, female, white, stage:Stage IB, alive, 4 days
3952.5
TCGA-VS-A950-01A
42 years, female, stage:Stage IIIA, alive, 1221 days
3877.3
TCGA-C5-A902-01A
35 years, female, black or african american, stage:Stage IB, alive, 149 days
3862.1
TCGA-C5-A8XI-01A
69 years, female, black or african american, stage:Stage IB, alive, 254 days
3839.0
TCGA-C5-A1BM-01A
78 years, female, black or african american, stage:Stage IB, dead, 2520 days
3824.9
TCGA-VS-A8EH-01A
56 years, female, stage:Stage IIIB, alive, 986 days
3744.4
TCGA-FU-A3YQ-01A
35 years, female, white, stage:Stage IB, alive, 861 days
3725.8
TCGA-VS-A9V4-01A
63 years, female, white, stage:Stage IVA, dead, 132 days
3671.4
TCGA-EK-A2RB-01A
48 years, female, white, stage:Stage IVB, alive, 9 days
3668.4
TCGA-VS-A9UM-01A
39 years, female, black or african american, stage:Stage IVB, dead, 829 days
3654.8
TCGA-VS-A8EC-01A
55 years, female, white, stage:Stage IIIB, alive, 1415 days
3623.2
TCGA-UC-A7PI-01A
44 years, female, white, stage:Stage IB, alive, 2114 days
3605.6
TCGA-VS-A9UP-01A
43 years, female, stage:Stage IIA, alive, 1444 days
3604.4
TCGA-FU-A3HY-01A
47 years, female, white, stage:Stage IB, alive, 954 days
3600.0
TCGA-HM-A3JJ-01A
40 years, female, black or african american, stage:Stage IB, dead, 659 days
3551.6
TCGA-MA-AA41-01A
33 years, female, white, stage:Stage IIB, alive, 279 days
3549.4
TCGA-DG-A2KH-01A
25 years, female, stage:Stage IB, alive, 34 days
3540.0
TCGA-C5-A907-01A
47 years, female, white, stage:Stage IB, alive, 448 days
3539.6
TCGA-VS-A9V3-01A
62 years, female, white, stage:Stage IVB, alive, 540 days
3524.2
TCGA-VS-A9UL-01A
79 years, female, white, stage:Stage IIIB, dead, 442 days
3513.5
TCGA-DS-A7WI-01A
43 years, female, white, stage:Stage IIA, dead, 252 days
3500.1
TCGA-C5-A2M1-01A
37 years, female, white, stage:Stage IB, alive, 1169 days
3492.9
TCGA-LP-A7HU-01A
53 years, female, asian, stage:Stage II, alive, 406 days
3457.2
TCGA-DR-A0ZM-01A
61 years, female, white, stage:Stage IIIB, alive, 1791 days
3441.7
TCGA-JX-A5QV-01A
37 years, female, white, stage:Stage IB, alive, 636 days
3435.1
TCGA-Q1-A5R2-01A
64 years, female, white, stage:'--, alive, 499 days
3400.8
TCGA-EK-A2PM-01A
81 years, female, white, stage:Stage IIB, alive, 18 days
3382.6
TCGA-C5-A1MJ-01A
61 years, female, white, stage:Stage IB, dead, 14 days
3364.4
TCGA-EA-A3QE-01A
45 years, female, white, stage:Stage IB, alive, 761 days
3327.1
TCGA-VS-A9UR-01A
53 years, female, white, stage:Stage IIA, alive, 793 days
3324.0
TCGA-C5-A3HE-01A
44 years, female, white, stage:Stage IB, alive, 548 days
3313.8
TCGA-C5-A7UH-01A
55 years, female, white, stage:Stage IIIB, alive, 3988 days
3313.2
TCGA-VS-A9UC-01A
32 years, female, stage:Stage IIB, alive, 825 days
3306.1
TCGA-EA-A5ZF-01A
56 years, female, asian, stage:Stage IB, alive, 828 days
3293.5
TCGA-JW-AAVH-01A
46 years, female, white, stage:Stage IB, alive, 552 days
3269.1
TCGA-EA-A50E-01A
45 years, female, asian, stage:Stage IVA, dead, 227 days
3254.7
TCGA-DS-A0VM-01A
51 years, female, white, stage:Stage IB, alive, 3589 days
3249.9
TCGA-C5-A7UE-01A
45 years, female, white, stage:Stage IB, alive, 4738 days
3249.0
TCGA-C5-A7UC-01A
48 years, female, white, stage:Stage IB, dead, 523 days
3244.8
TCGA-ZJ-AAX4-01A
85 years, female, white, stage:Stage II, alive, 21 days
3243.6
TCGA-C5-A1ML-01A
49 years, female, white, stage:Stage IB, dead, 636 days
3237.0
TCGA-VS-A959-01A
76 years, female, stage:Stage IIB, alive, 1561 days
3225.4
TCGA-VS-A9UJ-01A
55 years, female, stage:Stage IIB, dead, 52 days
3224.5
TCGA-VS-A94Z-01A
38 years, female, white, stage:Stage IIB, alive, 1015 days
3221.7
TCGA-C5-A3HF-01A
24 years, female, white, stage:Stage IB, dead, 543 days
3217.5
TCGA-FU-A2QG-01A
29 years, female, white, stage:Stage IB, alive, 579 days
3214.2
TCGA-MU-A8JM-01A
46 years, female, white, stage:Stage IB, alive, 607 days
3213.9
TCGA-C5-A905-01A
37 years, female, black or african american, stage:Stage IB, alive, 4879 days
3182.2
TCGA-VS-A8Q8-01A
26 years, female, white, stage:Stage IB, dead, 978 days
3063.3
TCGA-HM-A6W2-01A
34 years, female, black or african american, stage:Stage IVB, alive, 287 days
3036.4
TCGA-C5-A8XJ-01A
74 years, female, white, stage:Stage IB, alive, 4467 days
2981.5
TCGA-2W-A8YY-01A
51 years, female, white, stage:Stage IB, alive, 533 days
2977.9
TCGA-C5-A2LZ-01A
65 years, female, white, stage:Stage IIIB, dead, 3046 days
2975.8
TCGA-VS-A8EI-01A
38 years, female, white, stage:Stage IIB, alive, 729 days
2904.5
TCGA-EK-A2H0-01A
24 years, female, white, stage:Stage IIB, alive, 1847 days
2895.4
TCGA-VS-A94W-01A
39 years, female, white, stage:Stage IIB, alive, 1243 days
2882.5
TCGA-EA-A3Y4-01A
40 years, female, white, stage:Stage IB, alive, 1122 days
2867.3
TCGA-VS-A8EJ-01A
60 years, female, white, stage:Stage IIB, dead, 607 days
2828.2
TCGA-VS-A9UD-01A
73 years, female, white, stage:Stage IIIA, alive, 739 days
2819.4
TCGA-EA-A3HS-01A
35 years, female, white, stage:Stage IB, alive, 959 days
2803.7
TCGA-VS-A8EL-01A
38 years, female, black or african american, stage:Stage IIB, alive, 1992 days
2803.6
TCGA-VS-A9U6-01A
52 years, female, white, stage:Stage IVB, alive, 1320 days
2794.7
TCGA-EA-A3HR-01A
57 years, female, white, stage:Stage II, alive, 940 days
2787.4
TCGA-Q1-A73R-01A
45 years, female, white, stage:Stage I, alive, 567 days
2767.9
TCGA-DG-A2KL-01A
53 years, female, stage:Stage IIA, alive, 1367 days
2733.7
TCGA-ZJ-A8QQ-01A
24 years, female, white, stage:Stage IIB, alive, 2056 days
2719.7
TCGA-VS-A8EG-01A
36 years, female, stage:Stage IB, alive, 1386 days
2699.2
TCGA-VS-A94X-01A
40 years, female, black or african american, stage:Stage IIB, dead, 506 days
2695.4
TCGA-VS-AA62-01A
51 years, female, white, stage:Stage IIB, dead, 469 days
2678.3
TCGA-EK-A2RC-01A
33 years, female, stage:Stage IB, alive, 129 days
2666.4
TCGA-VS-A9UY-01A
29 years, female, stage:Stage IVB, dead, 555 days
2660.9
TCGA-DG-A2KK-01A
51 years, female, stage:Stage IIIB, alive, 2496 days
2652.5
TCGA-C5-A2LT-01A
38 years, female, white, stage:Stage IB, alive, 2226 days
2634.3
TCGA-BI-A0VS-01A
48 years, female, white, stage:Stage IB, alive, 1735 days
2629.3
TCGA-EK-A2R7-01A
45 years, female, white, stage:Stage IB, alive, 27 days
2624.1
TCGA-DS-A0VL-01A
25 years, female, white, stage:Stage IB, dead, 1692 days
2623.7
TCGA-EX-A8YF-01A
44 years, female, white, stage:Stage IB, alive, 473 days
2603.4
TCGA-C5-A7CL-01A
48 years, female, white, stage:Stage IIIB, dead, 471 days
2595.5
TCGA-C5-A8XK-01A
30 years, female, black or african american, stage:'--, alive, 3039 days
2582.4
TCGA-C5-A7X5-01A
72 years, female, black or african american, stage:Stage IVB, dead, 414 days
2573.0
TCGA-EA-A3QD-01A
59 years, female, white, stage:Stage IIIB, alive, 397 days
2538.4
TCGA-EK-A2H1-01A
20 years, female, white, stage:Stage IB, alive, 799 days
2512.6
TCGA-WL-A834-01A
57 years, female, white, stage:'--, alive, 791 days
2477.8
TCGA-VS-A9UI-01A
76 years, female, white, stage:Stage IIB, dead, 1372 days
2465.9
TCGA-C5-A1M7-01A
37 years, female, white, stage:Stage IB, alive, 1409 days
2460.4
TCGA-DS-A1OC-01A
47 years, female, white, stage:Stage IB, alive, 376 days
2457.9
TCGA-DS-A0VK-01A
45 years, female, white, stage:Stage IB, dead, 1118 days
2450.1
TCGA-C5-A1MI-01A
50 years, female, white, stage:Stage IB, dead, 1083 days
2438.5
TCGA-C5-A8ZZ-01A
41 years, female, white, stage:Stage IIB, alive, 636 days
2434.1
TCGA-EK-A2IP-01A
28 years, female, white, stage:Stage IB, alive, 202 days
2433.5
TCGA-C5-A1BJ-01A
34 years, female, white, stage:Stage IIB, alive, 4385 days
2432.9
TCGA-EK-A3GK-01A
33 years, female, white, stage:Stage IB, alive, 15 days
2432.5
TCGA-FU-A3HZ-01A
64 years, female, white, stage:Stage IIA, alive, 1103 days
2428.4
TCGA-EA-A5FO-01A
59 years, female, white, stage:Stage IB, alive, 815 days
2409.1
TCGA-IR-A3LL-01A
60 years, female, white, stage:Stage IB, alive, 1106 days
2380.8
TCGA-4J-AA1J-01A
31 years, female, white, stage:Stage IB, alive, 542 days
2374.9
TCGA-VS-A94Y-01A
47 years, female, white, stage:Stage IIB, dead, 144 days
2358.4
TCGA-IR-A3LC-01A
40 years, female, white, stage:Stage IB, alive, 3935 days
2346.7
TCGA-UC-A7PG-01A
44 years, female, white, stage:Stage IIIB, dead, 370 days
2345.1
TCGA-C5-A1MH-01A
71 years, female, white, stage:Stage IIIB, dead, 1186 days
2340.0
TCGA-EX-A449-01A
42 years, female, white, stage:Stage IVB, alive, 447 days
2337.8
TCGA-C5-A7CJ-01A
42 years, female, white, stage:Stage IIA, dead, 3097 days
2259.6
TCGA-EA-A6QX-01A
49 years, female, asian, stage:Stage IIIB, alive, 730 days
2242.3
TCGA-EA-A97N-01A
38 years, female, white, stage:Stage IB, alive, 11 days
2232.6
TCGA-VS-A8QC-01A
51 years, female, white, stage:Stage IVA, dead, 350 days
2231.4
TCGA-EA-A4BA-01A
49 years, female, white, stage:Stage IB, alive, 755 days
2230.0
TCGA-UC-A7PF-01A
44 years, female, stage:Stage IB, dead, 2859 days
2217.9
TCGA-VS-A958-01A
46 years, female, white, stage:Stage IIB, alive, 1525 days
2211.0
TCGA-DG-A2KM-01A
46 years, female, stage:Stage IB, alive, 1946 days
2209.2
TCGA-VS-A954-01A
67 years, female, stage:Stage IIIB, alive, 1714 days
2182.5
TCGA-EA-A5ZD-01A
40 years, female, asian, stage:Stage IB, alive, 830 days
2171.1
TCGA-C5-A1M6-01A
55 years, female, white, stage:Stage IIB, dead, 955 days
2169.6
TCGA-EK-A2RM-01A
40 years, female, white, stage:Stage IB, alive, 50 days
2162.7
TCGA-DS-A5RQ-01A
80 years, female, white, stage:Stage IB, alive, 512 days
2151.4
TCGA-HG-A2PA-01A
38 years, female, white, stage:Stage IB, dead, 773 days
2145.1
TCGA-IR-A3LK-01A
69 years, female, white, stage:Stage IB, dead, 908 days
2137.2
TCGA-ZJ-AAXA-01A
64 years, female, white, stage:Stage IB, alive, 43 days
2121.5
TCGA-Q1-A73O-01A
37 years, female, stage:Stage IB, alive, 428 days
2112.4
TCGA-FU-A3WB-01A
43 years, female, white, stage:Stage IIA, alive, 491 days
2092.0
TCGA-VS-A9UQ-01A
32 years, female, stage:Stage IB, alive, 1263 days
2086.3
TCGA-LP-A4AW-01A
52 years, female, asian, stage:Stage IA, alive, 27 days
2073.1
TCGA-FU-A5XV-01A
32 years, female, white, stage:Stage IIIB, alive, 321 days
2072.9
TCGA-EA-A43B-01A
43 years, female, white, stage:Stage IB, alive, 791 days
2062.6
TCGA-JW-A5VL-01A
37 years, female, american indian or alaska native, stage:Stage IB, alive, 474 days
2062.0
TCGA-MA-AA3Z-01A
43 years, female, white, stage:Stage IB, alive, 595 days
2020.0
TCGA-Q1-A6DT-01A
55 years, female, white, stage:Stage I, dead, 275 days
1988.8
TCGA-EA-A3HT-01A
68 years, female, white, stage:Stage IB, alive, 954 days
1956.6
TCGA-Q1-A73S-01A
33 years, female, white, stage:Stage IB, alive, 688 days
1955.9
TCGA-MU-A51Y-01A
27 years, female, white, stage:Stage IIA, alive, 854 days
1950.1
TCGA-FU-A3TQ-01A
55 years, female, white, stage:Stage IIIB, alive, 795 days
1941.1
TCGA-MA-AA43-01A
48 years, female, white, stage:Stage IIIB, alive, 346 days
1930.9
TCGA-EK-A2RO-01A
59 years, female, american indian or alaska native, stage:Stage IIB, alive, 2 days
1921.3
TCGA-Q1-A6DW-01A
44 years, female, white, stage:Stage I, alive, 534 days
1918.7
TCGA-JW-A5VH-01A
53 years, female, american indian or alaska native, stage:Stage IVB, dead, 100 days
1916.1
TCGA-C5-A1M5-01A
53 years, female, white, stage:Stage IB, dead, 2052 days
1914.1
TCGA-VS-A9UU-01A
42 years, female, stage:Stage IIB, alive, 442 days
1909.1
TCGA-JX-A3Q8-01A
40 years, female, asian, stage:Stage IB, alive, 1357 days
1893.5
TCGA-C5-A7CH-01A
43 years, female, white, stage:Stage IIB, alive, 4694 days
1853.6
TCGA-FU-A3NI-01A
45 years, female, white, stage:Stage IB, dead, 638 days
1851.6
TCGA-C5-A1M8-01A
43 years, female, white, stage:Stage IB, alive, 919 days
1839.4
TCGA-C5-A1MK-01A
79 years, female, white, stage:Stage IIIB, dead, 74 days
1820.4
TCGA-JX-A3Q0-01A
63 years, female, black or african american, stage:Stage III, alive, 6375 days
1808.9
TCGA-EX-A69L-01A
41 years, female, asian, stage:Stage IB, alive, 602 days
1780.6
TCGA-EK-A2RK-01A
67 years, female, white, stage:Stage IA, alive, 13 days
1778.9
TCGA-VS-A9U7-01A
30 years, female, white, stage:Stage IB, alive, 1472 days
1773.7
TCGA-EK-A2RA-01A
74 years, female, stage:Stage IIA, alive, 1246 days
1764.1
TCGA-C5-A1MN-01A
42 years, female, white, stage:Stage IIIB, dead, 1245 days
1734.3
TCGA-EK-A2RJ-01A
51 years, female, white, stage:Stage IB, alive, 53 days
1701.8
TCGA-C5-A1M9-01A
46 years, female, white, stage:Stage IB, dead, 1065 days
1700.8
TCGA-EA-A5ZE-01A
54 years, female, asian, stage:Stage IB, alive, 829 days
1685.1
TCGA-DS-A1O9-01A
75 years, female, white, stage:Stage IVA, dead, 266 days
1667.1
TCGA-DS-A7WF-01A
41 years, female, stage:Stage IB, dead, 492 days
1659.7
TCGA-C5-A1MP-01A
34 years, female, black or african american, stage:Stage IB, alive, 109 days
1650.1
TCGA-VS-A953-01A
63 years, female, stage:Stage IVA, dead, 477 days
1615.9
TCGA-EA-A1QS-01A
46 years, female, white, stage:Stage IB, alive, 1203 days
1596.7
TCGA-LP-A4AX-01A
45 years, female, asian, stage:Stage IB, alive, 380 days
1587.1
TCGA-JW-A5VG-01A
35 years, female, american indian or alaska native, stage:Stage IIA, alive, 834 days
1542.1
TCGA-EA-A3HQ-01A
60 years, female, white, stage:Stage II, alive, 1136 days
1533.3
TCGA-EA-A3HU-01A
43 years, female, white, stage:Stage II, alive, 1013 days
1515.2
TCGA-EA-A410-01A
51 years, female, white, stage:Stage IIA, alive, 803 days
1468.2
TCGA-DS-A1OB-01A
45 years, female, white, stage:Stage IB, dead, 861 days
1466.5
TCGA-EK-A2RL-01A
32 years, female, black or african american, stage:Stage IB, dead, 1453 days
1434.7
TCGA-C5-A7X3-01A
70 years, female, white, stage:Stage IIIB, dead, 284 days
1433.3
TCGA-UC-A7PD-01A
21 years, female, american indian or alaska native, stage:Stage IB, dead, 355 days
1424.7
TCGA-HM-A4S6-01A
51 years, female, white, stage:Stage IIIB, alive, 454 days
1421.0
TCGA-JW-A5VI-01A
45 years, female, american indian or alaska native, stage:Stage IIB, alive, 747 days
1402.4
TCGA-R2-A69V-01A
42 years, female, white, stage:Stage IB, alive, 596 days
1401.8
TCGA-MY-A5BD-01A
62 years, female, white, stage:Stage IIB, alive, 1667 days
1396.4
TCGA-EX-A1H5-01A
58 years, female, black or african american, stage:Stage IIB, alive, 619 days
1368.7
TCGA-MY-A913-01A
28 years, female, black or african american, stage:Stage IIA, alive, 524 days
1344.1
TCGA-MA-AA42-01A
75 years, female, white, stage:Stage IIB, alive, 259 days
1324.3
TCGA-VS-A8EB-01A
41 years, female, white, stage:Stage IIIB, dead, 305 days
1314.4
TCGA-EA-A1QT-01A
47 years, female, white, stage:Stage IB, alive, 1243 days
1295.5
TCGA-C5-A3HL-01A
76 years, female, white, stage:Stage IB, alive, 621 days
1291.6
TCGA-BI-A0VR-01A
53 years, female, white, stage:Stage IIIB, alive, 1505 days
1265.5
TCGA-LP-A5U2-01A
30 years, female, asian, stage:Stage IIIB, alive, 9 days
1263.2
TCGA-FU-A3TX-01A
78 years, female, stage:Stage IB, alive, 45 days
1247.2
TCGA-EA-A78R-01A
54 years, female, asian, stage:Stage IB, alive, 410 days
1211.3
TCGA-DS-A1OD-01A
49 years, female, white, stage:Stage IB, alive, 3874 days
1197.1
TCGA-C5-A7UI-01A
42 years, female, black or african american, stage:Stage IB, dead, 2888 days
1164.8
TCGA-MY-A5BE-01A
42 years, female, black or african american, stage:Stage IB, alive, 1066 days
1139.9
TCGA-EA-A5O9-01A
39 years, female, white, stage:Stage IB, alive, 788 days
1118.6
TCGA-LP-A5U3-01A
40 years, female, asian, stage:Stage IB, alive, 25 days
1116.4
TCGA-EK-A2R8-01A
48 years, female, white, stage:Stage IB, alive, 44 days
1075.7
TCGA-MA-AA3W-01A
54 years, female, white, stage:Stage IB, alive, 685 days
1055.2
TCGA-C5-A901-01A
44 years, female, white, stage:'--, alive, 518 days
1045.6
TCGA-VS-A9UH-01A
53 years, female, black or african american, stage:Stage IVA, alive, 1427 days
988.8
TCGA-EX-A3L1-01A
32 years, female, white, stage:Stage IIA, alive, 463 days
971.4
TCGA-EK-A3GJ-01A
51 years, female, native hawaiian or other pacific islander, stage:Stage IB, alive, 3 days
965.5
TCGA-C5-A1MQ-01A
35 years, female, white, stage:Stage IIA, alive, 1031 days
962.7
TCGA-HM-A3JK-01A
64 years, female, white, stage:Stage IIA, alive, 632 days
960.7
TCGA-IR-A3LH-01A
49 years, female, black or african american, stage:Stage IIA, alive, 2394 days
942.4
TCGA-C5-A2LY-01A
30 years, female, white, stage:Stage IB, alive, 2383 days
924.6
TCGA-JX-A3PZ-01A
25 years, female, white, stage:Stage IB, dead, 642 days
920.0
TCGA-Q1-A5R3-01A
56 years, female, white, stage:'--, alive, 485 days
881.2
TCGA-VS-A8QA-01A
44 years, female, stage:Stage IB, alive, 1099 days
845.3
TCGA-MY-A5BF-01A
68 years, female, white, stage:Stage IIA, alive, 634 days
822.5
TCGA-JW-A5VK-01A
43 years, female, black or african american, stage:Stage IB, alive, 623 days
785.8
TCGA-MA-AA3Y-01A
48 years, female, white, stage:Stage IB, alive, 542 days
776.5
TCGA-FU-A3EO-01A
55 years, female, white, stage:Stage IIB, alive, 490 days
757.0
TCGA-GH-A9DA-01A
27 years, female, white, stage:Stage IB, alive, 540 days
736.6
TCGA-DS-A0VN-01A
47 years, female, white, stage:Stage IB, alive, 3609 days
716.1
TCGA-EK-A2RE-01A
26 years, female, white, stage:Stage IIA, alive, 57 days
655.2
TCGA-C5-A2LX-01A
54 years, female, white, stage:Stage IB, alive, 2526 days
600.3
TCGA-JW-A852-01A
42 years, female, white, stage:Stage IIB, dead, 252 days
555.1
TCGA-ZJ-AAXU-01A
51 years, female, white, stage:Stage IIB, alive, 5 days
543.5
TCGA-C5-A1MF-01A
49 years, female, white, stage:Stage IB, alive, 1617 days
384.3
TCGA-C5-A0TN-01A
21 years, female, black or african american, stage:Stage IB, dead, 348 days
369.8
TCGA-FU-A23K-01A
28 years, female, white, stage:Stage IIIB, alive, 372 days
236.6
TCGA-C5-A1ME-01A
40 years, female, white, stage:Stage IB, alive, 1756 days
219.9
TCGA-C5-A2LV-01A
36 years, female, black or african american, stage:Stage IB, alive, 2234 days
145.2
TCGA-DG-A2KJ-01A
50 years, female, stage:Stage IIIB, alive, 2893 days
88.8
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CERVICAL CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.