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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
395.7
nTPM
HPA Brain:
912.6
nTPM
GTEx:
395.7
nTPM
FANTOM5:
1068.1
Scaled Tags Per Million
Mouse:
950.2
nTPM
Allen mouse:
12.7
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
912.6
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 715.8
2019
Male, age 18, unknown
1041.9
2666
Male, age 74, left hemisphere
817.5
2586
Male, age 75, left hemisphere
802.9
1827
Male, age 72, unknown
799.6
2828
Female, age 72, unknown
632.9
1870
Female, age 42, unknown
631.6
1833
Male, age 53, unknown
622.8
1830
Male, age 51, unknown
611.4
2411
Female, age 72, unknown
608.0
2219
Male, age 76, both hemispheres
589.5
Dorsal raphe nucleus nTPM: 616.8
2298
Female, age 72, unknown
692.3
1828
Male, age 53, unknown
655.6
2047
Male, age 72, unknown
633.0
2016
Female, age 72, unknown
574.2
2750
Male, age 76, both hemispheres
529.1
Inferior colliculus nTPM: 710.0
2097
Female, age 72, unknown
806.1
2849
Male, age 72, unknown
701.9
1848
Female, age 42, unknown
697.5
1890
Male, age 53, unknown
634.6
Median raphe nucleus nTPM: 585.9
2220
Male, age 76, midline
585.9
Periaquaductal grey, anterior nTPM: 725.7
2502
Female, age 75, unknown
814.8
1795
Male, age 51, unknown
712.2
1947
Male, age 18, unknown
650.2
Periaquaductal grey, dorsal nTPM: 615.8
2850
Male, age 76, both hemispheres
664.2
1840
Male, age 53, unknown
623.2
2464
Female, age 72, unknown
589.0
1831
Male, age 72, unknown
586.7
Periaquaductal grey, lateral nTPM: 590.5
2272
Male, age 74, both hemispheres
627.2
2053
Male, age 18, unknown
624.5
2140
Male, age 76, both hemispheres
520.0
Pretectal area nTPM: 912.6
1816
Male, age 51, unknown
1348.4
1944
Female, age 72, unknown
1347.3
1817
Female, age 42, unknown
1310.0
2007
Male, age 72, unknown
1266.3
1815
Male, age 53, unknown
1068.8
2407
Male, age 75, both hemispheres
681.5
2667
Female, age 75, unknown
672.5
2224
Female, age 72, unknown
650.4
2273
Male, age 74, both hemispheres
626.6
2825
Male, age 18, unknown
583.7
2316
Male, age 76, right hemisphere
482.9
Red nucleus nTPM: 661.0
2785
Male, age 18, unknown
925.8
1821
Female, age 72, unknown
763.9
2588
Male, age 74, left hemisphere
723.8
2584
Male, age 75, left hemisphere
707.5
2725
Female, age 75, unknown
704.6
2503
Female, age 72, unknown
656.8
1865
Male, age 51, unknown
630.5
1954
Female, age 42, unknown
621.4
2823
Male, age 76, right hemisphere
592.7
2769
Male, age 72, unknown
539.8
2227
Male, age 72, unknown
535.0
1904
Male, age 53, unknown
530.1
Substantia nigra nTPM: 725.4
1889
Female, age 72, unknown
1023.7
1941
Male, age 53, unknown
1009.5
2665
Male, age 74, both hemispheres
798.4
2583
Male, age 75, right hemisphere
728.1
2590
Female, age 75, unknown
711.9
1851
Male, age 51, unknown
645.8
1916
Female, age 42, unknown
641.1
2241
Male, age 72, unknown
609.5
2409
Female, age 72, unknown
600.6
2699
Male, age 18, unknown
485.8
Superior colliculus nTPM: 778.5
2087
Female, age 72, unknown
991.1
2664
Male, age 75, both hemispheres
844.7
2261
Male, age 18, unknown
819.1
1995
Male, age 72, unknown
802.8
2668
Female, age 75, unknown
799.4
1895
Male, age 76, right hemisphere
727.9
1913
Female, age 42, unknown
725.6
1796
Male, age 53, unknown
701.3
2587
Male, age 74, left hemisphere
694.2
1839
Male, age 51, unknown
678.8
Ventral tegmental area nTPM: 600.7
2223
Female, age 72, unknown
687.5
2410
Female, age 72, unknown
661.8
2218
Male, age 76, both hemispheres
600.7
1942
Male, age 51, unknown
569.8
1915
Female, age 42, unknown
557.0
2021
Male, age 53, unknown
527.8
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
395.7
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 395.7
Samples: 139
Max nTPM: 1144.3
Min nTPM: 248.0
Std nTPM: 104.7
Median nTPM: 374.4
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
1144.3
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
741.6
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
709.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
617.9
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
609.5
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
588.9
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
579.4
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
571.2
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
569.8
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
549.0
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
533.2
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
532.0
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
516.8
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
512.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
491.3
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
484.9
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
479.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
476.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
462.0
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
448.9
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
448.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
447.3
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
447.2
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
446.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
445.7
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
445.0
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
445.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
444.5
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
437.7
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
433.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
430.1
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
428.7
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
427.7
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
426.9
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
421.8
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
419.9
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
419.9
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
419.8
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
419.1
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
417.0
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
416.9
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
415.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
413.7
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
411.5
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
411.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
410.9
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
408.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
408.0
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
407.8
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
406.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
403.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
401.1
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
399.4
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
399.4
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
399.3
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
398.5
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
396.7
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
391.5
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
389.9
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
388.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
387.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
387.6
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
387.4
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
383.7
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
382.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
382.7
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
381.5
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
381.2
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
381.1
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
374.4
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
372.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
371.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
369.1
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
369.1
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
366.3
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
366.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
366.2
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
364.2
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
363.3
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
361.4
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
361.4
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
360.7
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
359.6
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
359.4
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
357.6
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
357.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
356.1
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
355.9
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
355.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
352.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
352.7
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
352.2
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
351.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
350.1
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
349.3
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
348.6
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
346.8
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
346.3
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
341.7
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
340.9
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
338.0
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
337.3
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
336.9
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
335.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
333.9
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
330.3
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
329.7
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
328.4
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
328.4
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
327.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
327.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
326.7
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
325.9
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
325.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
323.9
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
321.8
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
320.9
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
319.7
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
319.3
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
316.2
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
312.0
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
311.4
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
310.8
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
310.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
310.1
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
307.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
306.2
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
305.5
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
291.6
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
290.3
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
288.9
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
284.9
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
281.1
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
280.3
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
276.5
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
268.5
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
266.6
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
266.2
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
248.0
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
950.2
Mouse sample
Sample description
nTPM
Midbrain nTPM: 950.2
Samples: 4
Max nTPM: 1001.5
Min nTPM: 922.4
Sample A
Male
922.4
Sample B
Male
933.2
Sample C
Female
1001.5
Sample D
Female
943.6
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.