We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
691.5
nTPM
HPA Brain:
1467.9
nTPM
GTEx:
691.5
nTPM
FANTOM5:
2608.5
Scaled Tags Per Million
Mouse:
1505.0
nTPM
Allen mouse:
15.9
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA044999
Antibody CAB018558
Glial cells
Not detected
Medium
Neuronal cells
Medium
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1467.9
Sample id
Sample description
nTPM
Hippocampus nTPM: 1175.6
1898
Male, age 80, left hemisphere
1384.8
1911
Female, age 85, right hemisphere
1247.6
2621
Female, age 67, right hemisphere
1229.9
2148
Female, age 91, left hemisphere
1177.7
1855
Male, age 76, left hemisphere
1101.9
2529
Female, age 94, left hemisphere
911.9
Dentate gyrus nTPM: 1241.5
1927
Female, age 91, both hemispheres
2011.5
2010
Male, age 76, both hemispheres
1169.3
2246
Female, age 85, both hemispheres
1153.0
2531
Female, age 67, both hemispheres
1069.1
2530
Female, age 94, left hemisphere
1037.8
2528
Male, age 74, both hemispheres
1008.3
Entorhinal gyrus nTPM: 991.9
1938
Female, age 85, left hemisphere
1256.2
2613
Female, age 94, left hemisphere
1121.0
1787
Male, age 76, left hemisphere
1053.1
2764
Male, age 80, right hemisphere
940.3
2686
Male, age 75, right hemisphere
840.6
2117
Female, age 91, right hemisphere
740.4
Hippocampus, CA1 nTPM: 1467.9
2749
Male, age 80, left hemisphere
2523.8
2045
Male, age 76, both hemispheres
1408.6
1873
Female, age 85, both hemispheres
1310.9
2527
Male, age 74, both hemispheres
1230.6
2082
Female, age 91, right hemisphere
865.6
Hippocampus, CA2 nTPM: 1134.8
1963
Male, age 80, left hemisphere
1643.5
1892
Male, age 76, both hemispheres
1437.4
2249
Male, age 74, both hemispheres
1038.4
2113
Female, age 91, right hemisphere
929.8
1940
Female, age 85, left hemisphere
901.1
2437
Female, age 94, left hemisphere
858.7
Hippocampus, CA3 nTPM: 1332.6
2137
Male, age 80, left hemisphere
2379.4
2620
Female, age 94, left hemisphere
1272.5
1867
Male, age 76, both hemispheres
1195.2
2436
Male, age 74, both hemispheres
1108.1
2861
Female, age 67, both hemispheres
1041.9
1891
Female, age 85, both hemispheres
998.6
Parahippocampal cortex nTPM: 1094.1
2245
Female, age 91, both hemispheres
1502.2
1850
Male, age 80, both hemispheres
1432.9
1933
Female, age 85, both hemispheres
1184.9
2250
Female, age 67, right hemisphere
1108.3
1990
Female, age 91, right hemisphere
1107.0
2693
Female, age 94, both hemispheres
1064.7
2532
Female, age 72, left hemisphere
1008.6
2018
Male, age 76, both hemispheres
892.6
2692
Male, age 74, both hemispheres
826.7
2622
Female, age 67, right hemisphere
813.4
Perirhinal gyrus nTPM: 1366.2
1847
Female, age 91, left hemisphere
1743.9
1841
Female, age 85, right hemisphere
1387.5
1794
Male, age 80, right hemisphere
1362.5
2521
Female, age 94, right hemisphere
1216.6
2848
Male, age 76, right hemisphere
1120.3
Subiculum nTPM: 954.0
1901
Male, age 80, both hemispheres
1330.3
2042
Male, age 76, both hemispheres
1001.3
1977
Female, age 85, both hemispheres
907.7
2438
Female, age 94, left hemisphere
880.6
2729
Female, age 91, right hemisphere
842.2
2619
Male, age 74, both hemispheres
762.1
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
691.5
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 691.5
Samples: 197
Max nTPM: 1468.9
Min nTPM: 194.8
Std nTPM: 304.4
Median nTPM: 646.5
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
1468.9
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
1400.4
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
1391.9
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
1373.1
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
1369.4
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
1364.1
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
1346.9
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
1342.5
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
1336.0
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
1287.4
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
1285.8
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
1271.1
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
1269.4
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
1214.7
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
1200.0
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
1183.0
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
1181.1
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
1176.7
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
1165.5
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
1147.3
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
1142.7
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
1142.2
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
1111.7
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
1110.6
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
1103.7
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
1102.0
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
1092.9
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
1048.3
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
1042.4
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
1040.9
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
1030.7
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
1025.0
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
1024.3
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
1016.3
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
1006.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
999.2
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
983.3
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
972.7
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
965.6
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
959.7
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
951.9
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
931.6
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
914.2
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
913.8
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
912.3
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
901.0
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
897.1
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
892.1
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
877.9
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
877.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
875.8
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
866.2
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
859.3
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
858.1
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
855.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
850.3
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
850.1
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
849.9
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
849.9
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
849.9
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
842.3
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
839.1
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
825.4
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
815.1
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
814.6
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
810.6
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
810.1
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
800.5
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
787.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
783.0
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
776.7
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
773.5
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
763.6
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
763.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
760.7
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
751.3
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
747.8
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
737.5
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
731.2
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
730.7
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
724.6
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
716.9
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
711.5
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
706.3
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
704.7
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
693.7
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
693.4
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
691.6
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
690.8
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
685.9
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
676.5
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
668.3
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
664.4
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
663.2
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
656.2
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
655.9
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
655.4
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
650.3
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
646.5
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
646.4
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
644.8
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
644.7
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
643.6
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
640.8
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
640.0
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
631.5
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
624.9
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
620.6
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
614.1
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
597.5
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
595.4
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
590.5
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
588.7
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
587.1
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
569.6
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
567.2
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
562.9
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
562.3
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
560.2
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
556.3
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
556.3
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
547.8
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
546.7
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
528.7
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
527.9
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
516.6
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
512.9
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
511.6
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
504.8
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
500.7
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
492.7
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
490.1
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
484.8
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
479.3
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
478.4
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
476.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
473.3
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
472.7
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
469.8
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
469.8
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
467.2
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
464.2
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
462.5
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
462.3
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
459.5
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
452.7
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
449.3
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
435.6
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
435.5
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
430.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
427.7
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
422.0
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
421.4
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
415.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
414.8
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
413.8
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
413.2
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
408.0
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
402.9
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
401.6
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
397.5
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
394.7
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
389.4
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
384.8
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
380.5
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
376.3
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
373.7
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
370.8
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
366.0
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
364.1
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
355.3
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
351.6
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
349.5
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
347.7
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
341.0
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
339.4
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
327.4
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
326.5
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
322.5
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
318.6
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
316.3
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
315.3
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
312.8
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
303.9
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
294.7
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
292.3
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
290.3
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
286.0
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
281.4
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
273.5
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
270.8
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
265.2
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
261.2
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
260.4
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
258.8
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
220.6
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
194.8
Show allShow less
HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1505.0
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 1505.0
Samples: 4
Max nTPM: 1588.3
Min nTPM: 1463.1
Sample A
Male
1501.3
Sample B
Male
1588.3
Sample C
Female
1463.1
Sample D
Female
1467.2
Hippocampal formation nTPM: 1374.8
Samples: 4
Max nTPM: 1575.5
Min nTPM: 1227.7
Sample A
Male
1575.5
Sample B
Male
1336.1
Sample C
Female
1359.7
Sample D
Female
1227.7
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.