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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
24.7
nTPM
HPA Brain:
60.7
nTPM
GTEx:
24.7
nTPM
FANTOM5:
68.1
Scaled Tags Per Million
Pig:
62.8
nTPM
Mouse:
23.0
nTPM
Allen mouse:
2.2
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
60.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 50.1
2019
Male, age 18, unknown
58.7
2828
Female, age 72, unknown
58.6
1827
Male, age 72, unknown
58.2
2666
Male, age 74, left hemisphere
55.0
1833
Male, age 53, unknown
49.6
1870
Female, age 42, unknown
48.7
2411
Female, age 72, unknown
45.8
2219
Male, age 76, both hemispheres
44.6
1830
Male, age 51, unknown
44.1
2586
Male, age 75, left hemisphere
37.8
Dorsal raphe nucleus nTPM: 46.1
2016
Female, age 72, unknown
49.3
2298
Female, age 72, unknown
49.3
1828
Male, age 53, unknown
47.3
2750
Male, age 76, both hemispheres
46.3
2047
Male, age 72, unknown
38.5
Inferior colliculus nTPM: 44.6
1890
Male, age 53, unknown
47.5
1848
Female, age 42, unknown
45.6
2097
Female, age 72, unknown
44.7
2849
Male, age 72, unknown
40.5
Median raphe nucleus nTPM: 44.9
2220
Male, age 76, midline
44.9
Periaquaductal grey, anterior nTPM: 47.0
2502
Female, age 75, unknown
52.4
1795
Male, age 51, unknown
52.0
1947
Male, age 18, unknown
36.5
Periaquaductal grey, dorsal nTPM: 51.5
1831
Male, age 72, unknown
65.7
2850
Male, age 76, both hemispheres
57.1
2464
Female, age 72, unknown
45.3
1840
Male, age 53, unknown
37.9
Periaquaductal grey, lateral nTPM: 58.8
2272
Male, age 74, both hemispheres
63.6
2140
Male, age 76, both hemispheres
56.9
2053
Male, age 18, unknown
55.8
Pretectal area nTPM: 60.7
1816
Male, age 51, unknown
82.7
1944
Female, age 72, unknown
80.6
1815
Male, age 53, unknown
71.8
1817
Female, age 42, unknown
68.1
2007
Male, age 72, unknown
67.8
2273
Male, age 74, both hemispheres
58.0
2316
Male, age 76, right hemisphere
52.7
2667
Female, age 75, unknown
51.2
2224
Female, age 72, unknown
48.0
2407
Male, age 75, both hemispheres
45.9
2825
Male, age 18, unknown
41.2
Red nucleus nTPM: 52.2
2785
Male, age 18, unknown
64.1
1904
Male, age 53, unknown
59.7
1865
Male, age 51, unknown
58.6
2823
Male, age 76, right hemisphere
56.2
2503
Female, age 72, unknown
54.3
2725
Female, age 75, unknown
52.4
1954
Female, age 42, unknown
51.5
2227
Male, age 72, unknown
50.7
2588
Male, age 74, left hemisphere
48.7
1821
Female, age 72, unknown
45.8
2769
Male, age 72, unknown
43.7
2584
Male, age 75, left hemisphere
40.2
Substantia nigra nTPM: 49.1
2409
Female, age 72, unknown
64.7
2665
Male, age 74, both hemispheres
60.7
2590
Female, age 75, unknown
58.0
1889
Female, age 72, unknown
56.7
1851
Male, age 51, unknown
46.4
2583
Male, age 75, right hemisphere
45.8
1916
Female, age 42, unknown
40.7
1941
Male, age 53, unknown
39.4
2241
Male, age 72, unknown
39.3
2699
Male, age 18, unknown
38.9
Superior colliculus nTPM: 59.0
2261
Male, age 18, unknown
92.2
2087
Female, age 72, unknown
78.7
1913
Female, age 42, unknown
69.1
1995
Male, age 72, unknown
62.9
1796
Male, age 53, unknown
56.0
2587
Male, age 74, left hemisphere
55.0
2668
Female, age 75, unknown
47.9
1895
Male, age 76, right hemisphere
46.0
1839
Male, age 51, unknown
42.5
2664
Male, age 75, both hemispheres
39.7
Ventral tegmental area nTPM: 48.3
2410
Female, age 72, unknown
54.1
2218
Male, age 76, both hemispheres
53.3
2021
Male, age 53, unknown
51.6
2223
Female, age 72, unknown
46.4
1942
Male, age 51, unknown
42.3
1915
Female, age 42, unknown
42.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
24.7
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 24.7
Samples: 139
Max nTPM: 41.4
Min nTPM: 11.4
Std nTPM: 5.0
Median nTPM: 23.9
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
41.4
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
40.0
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
38.3
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
37.7
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
37.3
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
37.3
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
35.3
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
34.1
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
32.9
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
32.8
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
32.2
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
31.3
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
30.9
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
30.8
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
30.6
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
30.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
30.2
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
29.9
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
29.8
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
29.5
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
29.1
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
29.0
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
28.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
28.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
28.3
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
27.9
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
27.8
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
27.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
27.7
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
27.4
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
27.4
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
27.3
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
27.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
27.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
27.1
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
27.0
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
27.0
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
26.9
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
26.7
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
26.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
26.6
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
26.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
26.6
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
26.5
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
26.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
26.1
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
25.7
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
25.4
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
25.2
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
25.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
25.1
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
25.1
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
25.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
24.9
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
24.8
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
24.7
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
24.7
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
24.6
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
24.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
24.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
24.6
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
24.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
24.3
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
24.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
24.2
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
24.2
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
24.1
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
24.1
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
23.9
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
23.9
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
23.8
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
23.8
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
23.7
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
23.6
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
23.6
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
23.6
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
23.5
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
23.5
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
23.4
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
23.3
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
23.3
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
23.3
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
23.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
23.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
23.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
23.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
23.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
23.1
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
23.1
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
23.0
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
22.8
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
22.8
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
22.7
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
22.6
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
22.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
22.4
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
22.4
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
22.3
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
22.3
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
22.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
22.3
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
22.2
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
22.2
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
22.1
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
21.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
21.9
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
21.8
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
21.8
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
21.8
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
21.7
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
21.7
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
21.5
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
21.3
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
21.3
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
21.0
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
20.9
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
20.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
20.8
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
20.7
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
20.5
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
20.5
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
20.3
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
20.1
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
20.0
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
19.9
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
19.5
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
19.0
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
18.9
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
17.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
17.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
17.4
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
16.8
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
16.3
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
16.2
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
15.2
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
14.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
14.4
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
12.7
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
11.4
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
23.0
Mouse sample
Sample description
nTPM
Midbrain nTPM: 23.0
Samples: 4
Max nTPM: 25.7
Min nTPM: 20.3
Sample A
Male
20.3
Sample B
Male
22.7
Sample C
Female
25.7
Sample D
Female
23.3
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.