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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
High
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
61.8
nTPM
HPA Brain:
144.0
nTPM
GTEx:
61.8
nTPM
FANTOM5:
15.3
Scaled Tags Per Million
Pig:
91.6
nTPM
Mouse:
69.7
nTPM
Allen mouse:
6.4
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody CAB013066
Glial cells
Not detected
Neuronal cells
High
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
144.0
Sample id
Sample description
nTPM
Hippocampus nTPM: 137.4
2621
Female, age 67, right hemisphere
157.8
1898
Male, age 80, left hemisphere
139.3
1855
Male, age 76, left hemisphere
136.0
2529
Female, age 94, left hemisphere
132.9
1911
Female, age 85, right hemisphere
132.4
2148
Female, age 91, left hemisphere
125.9
Dentate gyrus nTPM: 140.0
2530
Female, age 94, left hemisphere
192.6
2010
Male, age 76, both hemispheres
148.5
2531
Female, age 67, both hemispheres
145.1
1927
Female, age 91, both hemispheres
128.4
2246
Female, age 85, both hemispheres
124.3
2528
Male, age 74, both hemispheres
101.2
Entorhinal gyrus nTPM: 137.9
2613
Female, age 94, left hemisphere
158.3
2764
Male, age 80, right hemisphere
154.3
1787
Male, age 76, left hemisphere
135.9
2117
Female, age 91, right hemisphere
129.1
1938
Female, age 85, left hemisphere
127.2
2686
Male, age 75, right hemisphere
122.7
Hippocampus, CA1 nTPM: 141.6
2749
Male, age 80, left hemisphere
223.2
2527
Male, age 74, both hemispheres
129.4
1873
Female, age 85, both hemispheres
128.8
2045
Male, age 76, both hemispheres
120.0
2082
Female, age 91, right hemisphere
106.8
Hippocampus, CA2 nTPM: 130.1
1963
Male, age 80, left hemisphere
169.4
1892
Male, age 76, both hemispheres
149.3
2437
Female, age 94, left hemisphere
144.6
2249
Male, age 74, both hemispheres
111.3
2113
Female, age 91, right hemisphere
105.1
1940
Female, age 85, left hemisphere
100.9
Hippocampus, CA3 nTPM: 144.0
2137
Male, age 80, left hemisphere
183.3
2620
Female, age 94, left hemisphere
173.9
2861
Female, age 67, both hemispheres
156.8
1867
Male, age 76, both hemispheres
135.8
1891
Female, age 85, both hemispheres
122.7
2436
Male, age 74, both hemispheres
91.5
Parahippocampal cortex nTPM: 131.3
2245
Female, age 91, both hemispheres
156.3
2532
Female, age 72, left hemisphere
151.2
2693
Female, age 94, both hemispheres
132.1
2622
Female, age 67, right hemisphere
129.9
2692
Male, age 74, both hemispheres
129.9
1990
Female, age 91, right hemisphere
128.8
1933
Female, age 85, both hemispheres
126.8
2250
Female, age 67, right hemisphere
120.9
2018
Male, age 76, both hemispheres
119.7
1850
Male, age 80, both hemispheres
117.3
Perirhinal gyrus nTPM: 128.9
2521
Female, age 94, right hemisphere
144.1
1794
Male, age 80, right hemisphere
131.4
1847
Female, age 91, left hemisphere
127.8
2848
Male, age 76, right hemisphere
123.3
1841
Female, age 85, right hemisphere
117.9
Subiculum nTPM: 139.2
2438
Female, age 94, left hemisphere
161.3
2042
Male, age 76, both hemispheres
159.6
1901
Male, age 80, both hemispheres
151.8
1977
Female, age 85, both hemispheres
143.2
2619
Male, age 74, both hemispheres
117.6
2729
Female, age 91, right hemisphere
101.5
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
61.8
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 61.8
Samples: 197
Max nTPM: 108.0
Min nTPM: 9.5
Std nTPM: 14.2
Median nTPM: 62.0
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
108.0
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
98.2
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
95.0
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
94.0
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
92.8
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
91.2
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
89.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
88.2
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
85.5
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
83.4
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
83.0
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
82.5
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
82.5
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
82.0
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
82.0
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
81.7
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
79.9
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
79.7
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
79.5
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
79.5
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
78.7
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
78.5
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
78.5
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
78.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
77.8
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
77.6
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
77.5
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
77.1
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
77.0
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
76.1
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
76.0
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
75.8
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
75.4
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
74.8
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
74.5
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
74.1
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
73.8
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
73.1
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
72.9
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
72.9
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
72.5
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
72.2
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
72.2
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
71.7
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
71.7
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
71.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
71.0
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
70.7
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
70.7
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
70.4
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
70.1
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
69.5
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
69.5
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
69.3
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
69.1
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
69.0
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
68.9
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
68.9
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
68.4
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
68.3
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
68.1
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
67.8
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
67.6
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
67.5
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
67.5
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
67.4
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
67.3
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
67.1
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
67.1
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
67.0
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
66.5
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
66.3
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
66.2
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
65.7
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
65.7
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
65.6
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
65.4
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
65.2
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
64.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
64.6
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
64.4
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
64.1
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
63.9
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
63.8
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
63.5
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
63.5
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
63.2
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
63.1
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
63.1
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
63.0
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
63.0
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
62.8
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
62.6
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
62.4
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
62.4
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
62.3
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
62.3
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
62.2
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
62.0
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
61.9
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
61.2
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
60.8
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
60.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
60.0
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
59.9
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
59.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
59.8
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
59.8
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
59.7
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
59.5
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
59.5
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
59.4
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
59.3
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
59.2
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
59.0
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
58.9
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
58.7
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
58.5
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
58.5
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
58.3
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
58.1
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
58.0
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
57.8
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
57.7
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
57.5
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
57.3
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
57.3
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
57.2
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
57.1
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
56.9
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
56.8
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
56.6
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
56.6
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
56.2
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
56.1
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
56.0
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
55.6
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
55.5
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
55.1
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
55.0
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
54.9
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
54.6
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
54.4
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
54.1
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
53.9
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
53.8
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
53.7
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
53.5
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
53.4
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
52.6
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
52.3
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
52.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
51.8
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
51.2
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
51.2
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
51.1
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
50.9
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
50.7
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
50.7
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
50.6
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
50.6
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
50.0
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
50.0
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
50.0
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
49.8
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
49.7
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
49.5
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
48.6
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
47.4
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
47.3
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
47.0
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
46.8
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
46.7
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
45.2
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
44.5
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
44.4
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
43.7
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
43.5
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
43.4
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
43.3
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
42.9
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
42.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
41.8
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
41.0
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
40.4
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
40.0
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
39.3
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
39.0
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
38.5
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
36.5
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
34.8
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
34.1
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
31.0
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
30.0
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
30.0
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
24.3
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
9.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
69.7
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 68.6
Samples: 4
Max nTPM: 70.3
Min nTPM: 66.4
Sample A
Male
66.4
Sample B
Male
70.3
Sample C
Female
68.0
Sample D
Female
69.5
Hippocampal formation nTPM: 69.7
Samples: 4
Max nTPM: 74.2
Min nTPM: 62.7
Sample A
Male
62.7
Sample B
Male
73.3
Sample C
Female
74.2
Sample D
Female
68.7
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.