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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PALM3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
46.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
28.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
27.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
27.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
27.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
23.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
23.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
20.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
19.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
19.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
19.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
18.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
18.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
17.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
16.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
15.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
14.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
13.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
12.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
11.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
9.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
9.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
7.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
6.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
5.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
5.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
5.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
5.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
5.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
5.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
4.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
4.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
4.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
4.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
4.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
3.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
3.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
3.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
3.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
3.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
3.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
3.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
3.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
2.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
2.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
2.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
2.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
2.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
2.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
2.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
2.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
2.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
2.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
2.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
2.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
2.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
2.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
2.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
2.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
1.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
1.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
1.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
1.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
1.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
1.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
1.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
1.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
1.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
1.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
1.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
1.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
1.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PALM3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.3
Number of samples
231
Samples
Sample
Description
TPM
DO23532
0 years, female, NA, stage:1, alive, 960 days
101.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
76.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
56.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
50.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
46.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
45.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
44.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
42.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
40.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
40.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
37.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
35.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
34.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
33.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
31.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
30.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
30.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
30.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
30.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
29.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
29.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
28.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
27.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
26.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
24.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
24.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
22.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
21.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
20.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
20.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
18.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
18.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
18.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
17.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
17.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
17.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
17.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
16.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
16.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
15.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
15.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
15.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
14.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
13.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
13.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
9.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
8.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
7.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
6.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
6.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
5.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
5.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
5.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
5.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
5.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
4.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
4.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
4.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
3.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
3.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
3.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
3.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
3.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
3.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
3.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
3.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
3.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
3.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
3.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
3.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
2.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
2.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
2.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
2.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
2.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
2.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
2.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
2.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
2.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
2.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
2.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
2.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
2.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
2.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
2.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
1.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
1.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
1.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
1.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
1.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
1.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
1.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
1.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
1.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
1.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
1.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
1.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
1.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
1.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
1.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
1.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
0.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
0.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
0.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
698
Normal
1.2
944
Normal
1.2
786
Normal
1.2
1046
Normal
1.2
648
Normal
1.2
534
Normal
1.2
462
Normal
1.2
618
Normal
1.2
922
Normal
1.2
858
Normal
1.2
412
Normal
1.1
824
Normal
1.1
424
Normal
1.1
924
Normal
1.1
222
Normal
1.1
488
Normal
1.1
862
Normal
1.1
984
Normal
1.1
738
Normal
1.1
723
Tumor
1.1
414
Normal
1.1
818
Normal
1.1
964
Normal
1.1
756
Normal
1.1
664
Normal
1.1
426
Normal
1.0
686
Normal
1.0
514
Normal
1.0
422
Normal
1.0
546
Normal
1.0
968
Normal
1.0
868
Normal
1.0
482
Normal
1.0
528
Normal
1.0
958
Normal
1.0
464
Normal
1.0
518
Normal
1.0
356
Normal
1.0
472
Normal
1.0
446
Normal
1.0
568
Normal
1.0
918
Normal
1.0
1014
Normal
1.0
666
Normal
1.0
716
Normal
1.0
636
Normal
1.0
728
Normal
1.0
564
Normal
0.9
982
Normal
0.9
436
Normal
0.9
342
Normal
0.9
196
Normal
0.9
258
Normal
0.9
926
Normal
0.9
1042
Normal
0.9
416
Normal
0.9
1032
Normal
0.9
227
Tumor
0.9
864
Normal
0.9
513
Tumor
0.9
866
Normal
0.9
428
Normal
0.9
327
Tumor
0.9
162
Normal
0.9
746
Normal
0.9
956
Normal
0.9
526
Normal
0.9
332
Normal
0.9
1022
Normal
0.9
882
Normal
0.9
344
Normal
0.9
328
Normal
0.8
186
Normal
0.8
376
Normal
0.8
314
Normal
0.8
136
Normal
0.8
874
Normal
0.8
742
Normal
0.8
628
Normal
0.8
484
Normal
0.8
111
Normal
0.8
212
Normal
0.8
952
Normal
0.8
878
Normal
0.8
642
Normal
0.8
286
Normal
0.8
912
Normal
0.8
955
Tumor
0.8
884
Normal
0.8
714
Normal
0.8
368
Normal
0.8
852
Normal
0.8
1028
Normal
0.8
966
Normal
0.7
172
Normal
0.7
132
Normal
0.7
358
Normal
0.7
1044
Normal
0.7
1026
Normal
0.7
481
Tumor
0.7
713
Tumor
0.7
218
Normal
0.7
976
Normal
0.7
466
Normal
0.7
616
Normal
0.7
452
Normal
0.7
778
Normal
0.7
396
Normal
0.7
456
Normal
0.7
617
Tumor
0.7
148
Normal
0.7
298
Normal
0.7
494
Normal
0.7
128
Normal
0.7
938
Normal
0.7
468
Normal
0.6
722
Normal
0.6
1016
Normal
0.6
278
Normal
0.6
228
Normal
0.6
672
Normal
0.6
312
Normal
0.6
432
Normal
0.6
392
Normal
0.6
558
Normal
0.6
352
Normal
0.6
214
Normal
0.6
142
Normal
0.6
1031
Tumor
0.6
744
Normal
0.6
394
Normal
0.5
978
Normal
0.5
554
Normal
0.5
366
Normal
0.5
627
Tumor
0.5
916
Normal
0.5
232
Normal
0.5
448
Normal
0.5
114
Normal
0.5
272
Normal
0.5
138
Normal
0.5
574
Normal
0.5
262
Normal
0.4
662
Normal
0.4
362
Normal
0.4
785
Tumor
0.4
386
Normal
0.4
364
Normal
0.4
388
Normal
0.4
914
Normal
0.4
777
Tumor
0.4
915
Tumor
0.4
816
Normal
0.4
572
Normal
0.4
284
Normal
0.4
474
Normal
0.4
696
Normal
0.3
188
Normal
0.3
146
Normal
0.3
268
Normal
0.3
641
Tumor
0.3
516
Normal
0.3
354
Normal
0.2
515
Tumor
0.2
451
Tumor
0.2
461
Tumor
0.2
498
Normal
0.2
434
Normal
0.2
1027
Tumor
0.2
727
Tumor
0.2
478
Normal
0.2
536
Normal
0.2
492
Normal
0.1
538
Normal
0.1
365
Tumor
0.1
126
Normal
0.1
415
Tumor
0.1
195
Tumor
0.1
124
Normal
0.1
524
Normal
0.1
271
Tumor
0.0
444
Normal
0.0
224
Normal
0.0
423
Tumor
0.0
981
Tumor
0.0
361
Tumor
0.0
411
Tumor
0.0
954
Normal
0.0
921
Tumor
0.0
217
Tumor
-0.1
685
Tumor
-0.1
1013
Tumor
-0.2
113
Tumor
-0.2
192
Normal
-0.2
715
Tumor
-0.2
123
Tumor
-0.2
261
Tumor
-0.3
384
Normal
-0.3
471
Tumor
-0.3
721
Tumor
-0.3
393
Tumor
-0.3
571
Tumor
-0.3
967
Tumor
-0.4
1043
Tumor
-0.4
851
Tumor
-0.4
137
Tumor
-0.4
267
Tumor
-0.5
1025
Tumor
-0.5
963
Tumor
-0.5
867
Tumor
-0.5
1045
Tumor
-0.5
145
Tumor
-0.5
171
Tumor
-0.6
435
Tumor
-0.6
911
Tumor
-0.6
141
Tumor
-0.6
663
Tumor
-0.6
465
Tumor
-0.6
873
Tumor
-0.6
863
Tumor
-0.7
493
Tumor
-0.7
387
Tumor
-0.7
857
Tumor
-0.7
943
Tumor
-0.7
533
Tumor
-0.7
925
Tumor
-0.8
473
Tumor
-0.8
615
Tumor
-0.8
331
Tumor
-0.8
563
Tumor
-0.8
917
Tumor
-0.8
147
Tumor
-0.8
953
Tumor
-0.8
741
Tumor
-0.9
483
Tumor
-0.9
187
Tumor
-0.9
355
Tumor
-0.9
1015
Tumor
-0.9
537
Tumor
-0.9
861
Tumor
-0.9
814
Normal
-0.9
745
Tumor
-0.9
491
Tumor
-1.0
553
Tumor
-1.0
823
Tumor
-1.0
191
Tumor
-1.0
567
Tumor
-1.0
467
Tumor
-1.1
447
Tumor
-1.1
185
Tumor
-1.1
665
Tumor
-1.1
813
Tumor
-1.1
525
Tumor
-1.1
983
Tumor
-1.1
421
Tumor
-1.1
445
Tumor
-1.2
277
Tumor
-1.2
697
Tumor
-1.2
375
Tumor
-1.2
881
Tumor
-1.2
477
Tumor
-1.2
977
Tumor
-1.2
557
Tumor
-1.3
755
Tumor
-1.3
353
Tumor
-1.3
395
Tumor
-1.3
975
Tumor
-1.3
865
Tumor
-1.3
357
Tumor
-1.4
913
Tumor
-1.4
695
Tumor
-1.4
965
Tumor
-1.4
923
Tumor
-1.4
883
Tumor
-1.4
413
Tumor
-1.4
161
Tumor
-1.4
131
Tumor
-1.4
341
Tumor
-1.4
297
Tumor
-1.5
523
Tumor
-1.5
877
Tumor
-1.5
647
Tumor
-1.5
433
Tumor
-1.5
957
Tumor
-1.5
213
Tumor
-1.5
257
Tumor
-1.5
391
Tumor
-1.5
363
Tumor
-1.6
1041
Tumor
-1.6
724
Normal
-1.6
951
Tumor
-1.7
313
Tumor
-1.7
817
Tumor
-1.7
517
Tumor
-1.7
573
Tumor
-1.8
127
Tumor
-1.8
231
Tumor
-1.8
383
Tumor
-1.8
545
Tumor
-1.8
135
Tumor
-1.8
427
Tumor
-1.8
125
Tumor
-1.8
455
Tumor
-1.8
1021
Tumor
-1.8
937
Tumor
-1.9
112
Tumor
-1.9
311
Tumor
-1.9
367
Tumor
-1.9
431
Tumor
-2.0
221
Tumor
-2.0
535
Tumor
-2.0
211
Tumor
-2.0
223
Tumor
-2.0
285
Tumor
-2.1
527
Tumor
-2.1
351
Tumor
-2.1
463
Tumor
-2.1
635
Tumor
-2.1
425
Tumor
-2.2
497
Tumor
-2.2
443
Tumor
-2.2
283
Tumor
-2.2
385
Tumor
-2.2
671
Tumor
-2.2
737
Tumor
-2.4
487
Tumor
-2.4
343
Tumor
-2.4
661
Tumor
-2.5
815
Tumor
-2.7
743
Tumor
-2.7
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
