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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
19.5
Sample id
Sample description
nTPM
Amygdala nTPM: 19.5
2695
Female, age 67, right hemisphere
27.9
1987
Female, age 91, left hemisphere
19.6
2514
Male, age 75, right hemisphere
19.0
2814
Male, age 76, right hemisphere
18.1
2517
Female, age 94, left hemisphere
12.7
Basal amygdala nTPM: 13.4
2243
Female, age 91, right hemisphere
19.8
1955
Male, age 76, both hemispheres
17.4
2827
Female, age 67, right hemisphere
12.2
2609
Male, age 75, right hemisphere
11.7
2110
Male, age 80, left hemisphere
10.2
2685
Female, age 94, left hemisphere
9.3
Central amygdala nTPM: 14.1
1905
Male, age 76, both hemispheres
17.0
2239
Male, age 80, left hemisphere
16.6
2515
Male, age 75, right hemisphere
14.5
2701
Female, age 91, right hemisphere
11.3
2826
Female, age 94, left hemisphere
10.9
Corticomedial amygdala nTPM: 17.4
2242
Female, age 91, right hemisphere
21.7
2240
Male, age 76, both hemispheres
20.5
2829
Male, age 80, left hemisphere
18.7
2428
Male, age 75, right hemisphere
16.6
2429
Female, age 94, left hemisphere
16.4
2535
Female, age 67, right hemisphere
10.4
Lateral amygdala nTPM: 12.6
1883
Male, age 76, both hemispheres
14.8
2516
Male, age 75, right hemisphere
13.7
2534
Female, age 94, left hemisphere
12.3
2256
Male, age 80, left hemisphere
12.2
2830
Female, age 67, right hemisphere
11.7
2255
Female, age 91, right hemisphere
11.0
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
10.3
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 10.3
Samples: 152
Max nTPM: 23.9
Min nTPM: 0.4
Std nTPM: 3.9
Median nTPM: 10.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
23.9
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
23.1
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
21.1
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
20.4
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
18.7
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
17.2
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
16.8
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
16.7
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
16.6
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
16.6
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
16.4
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
16.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
16.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
15.5
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
15.1
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
15.0
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
15.0
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
14.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
14.9
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
14.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
14.7
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
14.4
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
14.3
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
14.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
14.1
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
14.1
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
14.1
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
13.8
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
13.8
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
13.6
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
13.6
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
13.6
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
13.3
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
13.3
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
12.8
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
12.6
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
12.5
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
12.5
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
12.4
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
12.3
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
12.3
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
12.2
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
12.0
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
11.9
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
11.9
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
11.9
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
11.9
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
11.9
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
11.8
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
11.8
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
11.7
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
11.6
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
11.6
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
11.6
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
11.4
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
11.4
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
11.4
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
11.3
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
11.2
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
11.1
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
11.1
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
11.1
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
10.9
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
10.8
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
10.6
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
10.6
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
10.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
10.5
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
10.5
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
10.4
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
10.4
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
10.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
10.4
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
10.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
10.3
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
10.2
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
10.2
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
10.2
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
10.1
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
10.0
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
10.0
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
9.8
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
9.8
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
9.7
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
9.7
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
9.4
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
9.2
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
9.2
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
9.0
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
9.0
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
9.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
9.0
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
8.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
8.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
8.7
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
8.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
8.6
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
8.5
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
8.5
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
8.5
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
8.5
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
8.5
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
8.5
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
8.4
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
8.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
8.3
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
8.1
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
8.0
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
8.0
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
8.0
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
7.9
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
7.8
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
7.7
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
7.7
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
7.7
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
7.7
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
7.4
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
7.4
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
7.3
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
7.2
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
7.2
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
7.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
7.1
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
6.9
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
6.9
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
6.8
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
6.7
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
6.6
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
6.5
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
6.5
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
6.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
6.3
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
6.0
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
6.0
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
6.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
5.9
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
5.7
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
5.6
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
5.6
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
5.5
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
5.2
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
5.1
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
4.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
4.9
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
4.8
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
4.7
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
4.6
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
4.0
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
4.0
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
2.0
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
1.3
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
0.4
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
121.2
Mouse sample
Sample description
nTPM
Amygdala nTPM: 121.2
Samples: 4
Max nTPM: 133.2
Min nTPM: 106.3
Sample A
Male
106.3
Sample B
Male
125.2
Sample C
Female
133.2
Sample D
Female
120.2
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.