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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Low
Neuronal projections:
High
Synapses:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
2.3
nTPM
HPA Brain:
22.4
nTPM
GTEx:
2.3
nTPM
FANTOM5:
65.0
Scaled Tags Per Million
Pig:
20.9
nTPM
Mouse:
7.0
nTPM
Allen mouse:
0.5
Expression energy
HIPPOCAMPUS - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA069552
Glial cells
Not detected
Immunohistochemical staining of human hippocampus shows strong projection positivity.
100 ฮผm
Neuronal cells
Not detected
Neuronal projections
High
Synapses
Not detected
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA069552
Glial cells
Not detected
Neuronal cells
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
22.4
Sample id
Sample description
nTPM
Hippocampus nTPM: 21.0
1855
Male, age 76, left hemisphere
27.8
1898
Male, age 80, left hemisphere
26.2
2621
Female, age 67, right hemisphere
24.1
2148
Female, age 91, left hemisphere
18.3
1911
Female, age 85, right hemisphere
17.1
2529
Female, age 94, left hemisphere
12.3
Dentate gyrus nTPM: 20.2
2010
Male, age 76, both hemispheres
25.0
2531
Female, age 67, both hemispheres
24.3
1927
Female, age 91, both hemispheres
23.5
2530
Female, age 94, left hemisphere
21.2
2246
Female, age 85, both hemispheres
13.8
2528
Male, age 74, both hemispheres
13.5
Entorhinal gyrus nTPM: 9.1
1787
Male, age 76, left hemisphere
13.1
2764
Male, age 80, right hemisphere
11.0
2613
Female, age 94, left hemisphere
9.5
1938
Female, age 85, left hemisphere
7.7
2686
Male, age 75, right hemisphere
6.8
2117
Female, age 91, right hemisphere
6.7
Hippocampus, CA1 nTPM: 22.4
2749
Male, age 80, left hemisphere
34.4
2045
Male, age 76, both hemispheres
26.2
1873
Female, age 85, both hemispheres
24.3
2527
Male, age 74, both hemispheres
16.8
2082
Female, age 91, right hemisphere
10.5
Hippocampus, CA2 nTPM: 17.2
1963
Male, age 80, left hemisphere
30.9
1892
Male, age 76, both hemispheres
23.6
2437
Female, age 94, left hemisphere
15.6
2249
Male, age 74, both hemispheres
13.7
2113
Female, age 91, right hemisphere
11.3
1940
Female, age 85, left hemisphere
8.3
Hippocampus, CA3 nTPM: 19.0
2861
Female, age 67, both hemispheres
25.6
2137
Male, age 80, left hemisphere
23.2
2620
Female, age 94, left hemisphere
22.9
1867
Male, age 76, both hemispheres
15.7
2436
Male, age 74, both hemispheres
14.4
1891
Female, age 85, both hemispheres
12.0
Parahippocampal cortex nTPM: 11.9
2245
Female, age 91, both hemispheres
17.8
2693
Female, age 94, both hemispheres
15.7
2250
Female, age 67, right hemisphere
13.5
2018
Male, age 76, both hemispheres
12.3
1990
Female, age 91, right hemisphere
12.2
2622
Female, age 67, right hemisphere
12.2
2532
Female, age 72, left hemisphere
9.4
1933
Female, age 85, both hemispheres
9.1
1850
Male, age 80, both hemispheres
8.9
2692
Male, age 74, both hemispheres
7.9
Perirhinal gyrus nTPM: 11.9
2521
Female, age 94, right hemisphere
16.6
1847
Female, age 91, left hemisphere
11.8
1794
Male, age 80, right hemisphere
11.0
1841
Female, age 85, right hemisphere
11.0
2848
Male, age 76, right hemisphere
9.2
Subiculum nTPM: 12.1
2729
Female, age 91, right hemisphere
13.9
1977
Female, age 85, both hemispheres
13.8
1901
Male, age 80, both hemispheres
13.7
2438
Female, age 94, left hemisphere
11.4
2042
Male, age 76, both hemispheres
10.3
2619
Male, age 74, both hemispheres
9.7
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2.3
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 2.3
Samples: 197
Max nTPM: 9.3
Min nTPM: 0.1
Std nTPM: 1.5
Median nTPM: 1.9
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
9.3
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
6.7
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
6.6
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
6.6
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
6.2
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
5.9
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
5.6
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
5.5
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
5.5
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
5.4
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
5.4
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
5.2
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
5.2
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
5.1
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
4.9
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
4.8
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
4.8
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
4.8
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
4.7
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
4.7
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
4.6
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
4.5
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
4.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
4.5
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
4.4
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
4.1
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
4.1
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
4.1
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
4.0
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
3.8
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
3.8
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
3.8
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
3.7
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
3.7
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
3.7
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
3.7
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
3.6
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
3.6
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
3.5
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
3.5
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
3.4
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
3.4
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
3.4
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
3.4
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
3.4
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
3.3
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
3.3
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
3.3
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
3.2
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
3.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
3.2
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
3.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
3.0
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
2.9
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
2.9
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
2.9
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
2.9
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
2.8
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
2.7
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
2.6
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
2.6
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
2.6
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
2.6
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
2.6
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
2.5
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
2.5
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
2.5
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
2.5
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
2.4
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
2.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
2.4
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
2.4
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
2.3
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
2.3
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
2.3
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
2.3
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
2.3
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
2.2
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
2.2
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
2.2
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
2.2
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
2.2
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
2.1
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
2.1
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
2.1
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
2.1
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
2.1
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
2.1
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
2.1
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
2.0
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
2.0
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
2.0
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
2.0
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
2.0
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
2.0
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
2.0
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
1.9
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
1.9
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
1.9
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
1.9
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
1.9
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
1.9
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
1.9
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
1.9
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
1.8
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
1.8
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
1.8
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
1.8
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
1.8
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
1.8
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
1.7
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
1.7
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
1.7
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
1.7
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
1.7
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
1.7
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
1.7
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
1.7
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
1.7
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
1.6
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
1.6
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
1.6
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
1.6
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
1.5
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
1.5
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
1.5
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
1.5
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
1.5
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
1.5
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
1.4
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
1.4
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
1.4
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
1.4
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
1.4
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
1.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
1.3
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
1.3
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
1.3
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
1.3
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
1.3
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
1.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
1.3
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
1.3
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
1.2
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
1.2
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
1.2
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
1.2
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
1.2
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
1.2
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
1.2
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
1.2
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
1.2
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
1.2
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
1.1
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
1.1
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
1.1
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
1.1
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
1.1
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
1.1
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
1.1
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
1.1
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
1.1
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
1.1
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
1.1
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
1.1
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
1.0
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
1.0
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
1.0
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
1.0
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
1.0
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
1.0
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
1.0
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
1.0
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
0.9
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
0.9
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
0.9
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
0.9
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
0.9
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
0.9
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
0.9
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
0.9
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
0.8
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
0.8
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
0.8
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
0.8
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
0.8
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
0.7
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
0.7
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
0.7
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
0.6
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
0.6
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
0.6
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
0.6
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
0.4
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
0.4
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
0.3
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
0.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
7.0
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 6.0
Samples: 4
Max nTPM: 9.3
Min nTPM: 4.4
Sample A
Male
4.4
Sample B
Male
4.6
Sample C
Female
5.8
Sample D
Female
9.3
Hippocampal formation nTPM: 7.0
Samples: 4
Max nTPM: 8.7
Min nTPM: 5.1
Sample A
Male
5.1
Sample B
Male
8.6
Sample C
Female
8.7
Sample D
Female
5.4
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.