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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
170.0
nTPM
FANTOM5:
90.4
Scaled Tags Per Million
Pig:
35.1
nTPM
Allen mouse:
2.5
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
170.0
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 112.2
2188
Female, age 91, both hemispheres
132.9
2090
Male, age 80, both hemispheres
129.1
1984
Male, age 76, both hemispheres
94.3
2301
Female, age 85, both hemispheres
92.5
Dorsal cochlear nucleus nTPM: 170.0
2802
Male, age 74, right hemisphere
245.6
2378
Male, age 80, both hemispheres
197.1
2370
Male, age 61, both hemispheres
148.2
2058
Male, age 76, both hemispheres
146.1
2187
Female, age 91, both hemispheres
113.1
Dorsal tegmental nucleus nTPM: 121.9
2083
Male, age 80, both hemispheres
135.0
2326
Male, age 74, both hemispheres
128.3
2358
Male, age 61, both hemispheres
118.3
1936
Male, age 76, left hemisphere
106.0
Dorsolateral tegmental area nTPM: 121.1
2654
Male, age 80, both hemispheres
149.7
2751
Female, age 85, both hemispheres
141.1
2337
Male, age 61, both hemispheres
140.3
2141
Male, age 76, both hemispheres
87.8
2360
Male, age 74, both hemispheres
87.0
Kolliker-Fuse nucleus nTPM: 103.1
2163
Male, age 80, both hemispheres
117.1
2793
Female, age 91, left hemisphere
108.0
2315
Male, age 76, right hemisphere
84.3
Lateral lemniscal nuclei nTPM: 112.1
2320
Female, age 91, left hemisphere
144.0
2453
Male, age 74, right hemisphere
138.7
2036
Male, age 80, both hemispheres
114.9
2746
Female, age 85, left hemisphere
83.7
2169
Male, age 76, both hemispheres
79.2
Lateral parabrachial nucleus nTPM: 105.8
2790
Male, age 61, both hemispheres
153.5
2139
Female, age 85, right hemisphere
95.8
2013
Male, age 80, both hemispheres
91.8
2792
Male, age 76, both hemispheres
82.2
Lateral vestibular nucleus nTPM: 103.5
2184
Male, age 76, both hemispheres
114.7
2311
Male, age 80, both hemispheres
92.4
Locus coeruleus nTPM: 75.7
2317
Female, age 72, unknown
92.6
2162
Male, age 80, both hemispheres
87.3
2123
Female, age 91, both hemispheres
86.0
1980
Male, age 76, both hemispheres
80.3
2014
Male, age 55, unknown
70.1
2720
Male, age 74, both hemispheres
69.4
2788
Male, age 74, unknown
44.1
Medial parabrachial nucleus nTPM: 126.2
2156
Male, age 61, both hemispheres
155.1
2170
Female, age 91, both hemispheres
150.5
2463
Female, age 85, right hemisphere
130.2
2786
Male, age 76, both hemispheres
108.2
2854
Male, age 80, both hemispheres
87.0
Medial periolivary nuclei nTPM: 107.6
2081
Male, age 80, both hemispheres
126.2
2458
Female, age 91, both hemispheres
120.9
2171
Female, age 85, both hemispheres
111.8
2063
Male, age 76, both hemispheres
101.2
2791
Male, age 74, right hemisphere
78.0
Motor facial nucleus nTPM: 127.3
2795
Female, age 91, both hemispheres
199.6
2126
Male, age 61, both hemispheres
171.4
2327
Male, age 80, both hemispheres
138.2
2062
Male, age 76, both hemispheres
93.4
2697
Female, age 85, both hemispheres
81.6
2365
Male, age 74, right hemisphere
79.5
Motor trigeminal nucleus nTPM: 145.4
2335
Male, age 61, both hemispheres
181.4
2560
Male, age 74, both hemispheres
169.9
2321
Female, age 91, both hemispheres
138.6
2079
Male, age 80, both hemispheres
120.0
2309
Male, age 76, both hemispheres
117.0
Nuclei of the trapezoid body nTPM: 113.1
2368
Female, age 91, both hemispheres
129.0
2735
Female, age 85, both hemispheres
118.1
2159
Male, age 61, both hemispheres
117.2
2166
Male, age 80, both hemispheres
115.1
1983
Male, age 76, both hemispheres
85.9
Nucleus raphe magnus nTPM: 113.5
2459
Female, age 91, both hemispheres
165.9
2328
Male, age 80, both hemispheres
144.3
2455
Male, age 74, both hemispheres
109.2
2172
Female, age 85, both hemispheres
102.0
2160
Male, age 61, both hemispheres
92.8
2051
Male, age 76, both hemispheres
66.8
Paramedian reticular nucleus nTPM: 107.5
2057
Male, age 80, both hemispheres
124.5
2313
Male, age 61, both hemispheres
119.4
2050
Female, age 85, both hemispheres
103.9
2052
Male, age 76, both hemispheres
82.2
Pedunculopontine tegmental nucleus nTPM: 93.0
2338
Male, age 61, both hemispheres
102.6
2334
Male, age 80, both hemispheres
102.1
1921
Female, age 85, both hemispheres
74.3
Pontine nuclei nTPM: 125.0
2319
Female, age 91, both hemispheres
150.7
2454
Male, age 74, left hemisphere
141.5
1863
Male, age 55, unknown
119.5
2727
Male, age 61, right hemisphere
119.4
2787
Female, age 85, both hemispheres
118.5
2115
Male, age 80, left hemisphere
117.5
1968
Male, age 76, left hemisphere
117.3
2109
Female, age 72, unknown
115.6
Pontine raphe nucleus nTPM: 108.7
2122
Female, age 85, midline
120.3
2853
Male, age 76, midline
97.0
Posteroventral cochlear nucleus nTPM: 126.8
2371
Male, age 61, both hemispheres
173.0
2135
Female, age 91, both hemispheres
148.6
2341
Male, age 80, both hemispheres
106.8
2070
Male, age 76, both hemispheres
105.4
2752
Female, age 85, both hemispheres
100.0
Principal sensory trigeminal nucleus nTPM: 110.9
2008
Male, age 80, left hemisphere
116.4
2158
Male, age 61, both hemispheres
112.4
2324
Male, age 76, both hemispheres
107.4
2367
Female, age 91, left hemisphere
107.4
Reticular pontine nucleus, caudal nTPM: 135.7
2332
Male, age 80, right hemisphere
159.5
2559
Male, age 74, both hemispheres
155.7
2457
Female, age 91, both hemispheres
144.5
2092
Male, age 76, both hemispheres
83.0
Reticular pontine nucleus, oral nTPM: 113.8
2366
Female, age 91, both hemispheres
128.7
2361
Male, age 74, both hemispheres
117.1
1939
Male, age 80, both hemispheres
112.3
2167
Male, age 76, both hemispheres
111.9
2012
Female, age 85, both hemispheres
99.1
Reticulotegmental nucleus nTPM: 164.6
2452
Male, age 74, both hemispheres
211.6
2333
Male, age 80, both hemispheres
187.2
2322
Female, age 91, both hemispheres
142.7
2325
Male, age 76, both hemispheres
117.0
Spinal trigeminal nucleus, oral nTPM: 112.9
2164
Male, age 80, both hemispheres
166.6
1978
Male, age 76, both hemispheres
90.6
2737
Female, age 85, both hemispheres
81.6
Subcoeruleus area nTPM: 111.1
2451
Male, age 74, both hemispheres
154.2
2369
Female, age 85, left hemisphere
131.5
1958
Male, age 80, both hemispheres
90.7
2323
Female, age 91, left hemisphere
89.9
2089
Male, age 76, left hemisphere
89.0
Superior olive nTPM: 104.3
2561
Female, age 91, both hemispheres
139.8
2329
Male, age 80, right hemisphere
133.2
2020
Male, age 76, both hemispheres
94.3
1875
Female, age 85, both hemispheres
79.5
2364
Male, age 74, right hemisphere
74.7
Ventral periolivary nuclei nTPM: 116.1
2794
Female, age 91, left hemisphere
136.2
2165
Male, age 80, both hemispheres
128.4
2023
Male, age 76, both hemispheres
100.4
2130
Female, age 85, both hemispheres
99.3
Ventrolateral tegmental area, A5 NE cell group nTPM: 120.9
2456
Female, age 91, both hemispheres
191.5
2161
Male, age 80, both hemispheres
151.6
2359
Male, age 61, both hemispheres
112.6
2449
Male, age 74, both hemispheres
108.6
2840
Female, age 85, both hemispheres
87.3
1959
Male, age 76, both hemispheres
73.7
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
35.1
Pig sample
Sample description
nTPM
Pons nTPM: 35.1
Samples: 4
Max nTPM: 51.9
Min nTPM: 26.2
Sample A
Female
51.9
Sample B
Female
26.2
Sample C
Male
29.1
Sample D
Male
33.3
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.