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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
200.5
nTPM
HPA Brain:
138.3
nTPM
GTEx:
200.5
nTPM
FANTOM5:
84.0
Scaled Tags Per Million
Pig:
40.6
nTPM
Mouse:
18.9
nTPM
Allen mouse:
3.0
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
138.3
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 105.2
2666
Male, age 74, left hemisphere
155.8
2019
Male, age 18, unknown
134.9
2828
Female, age 72, unknown
121.2
1870
Female, age 42, unknown
109.2
2411
Female, age 72, unknown
109.0
2586
Male, age 75, left hemisphere
107.4
1833
Male, age 53, unknown
94.2
1830
Male, age 51, unknown
91.6
1827
Male, age 72, unknown
74.7
2219
Male, age 76, both hemispheres
53.7
Dorsal raphe nucleus nTPM: 101.1
2750
Male, age 76, both hemispheres
108.7
1828
Male, age 53, unknown
104.8
2298
Female, age 72, unknown
100.2
2016
Female, age 72, unknown
98.6
2047
Male, age 72, unknown
93.1
Inferior colliculus nTPM: 101.7
2097
Female, age 72, unknown
129.3
1890
Male, age 53, unknown
110.2
1848
Female, age 42, unknown
102.6
2849
Male, age 72, unknown
64.7
Median raphe nucleus nTPM: 81.5
2220
Male, age 76, midline
81.5
Periaquaductal grey, anterior nTPM: 107.6
2502
Female, age 75, unknown
124.6
1795
Male, age 51, unknown
102.5
1947
Male, age 18, unknown
95.8
Periaquaductal grey, dorsal nTPM: 74.2
2464
Female, age 72, unknown
96.7
1831
Male, age 72, unknown
93.2
1840
Male, age 53, unknown
61.6
2850
Male, age 76, both hemispheres
45.2
Periaquaductal grey, lateral nTPM: 72.4
2053
Male, age 18, unknown
79.9
2272
Male, age 74, both hemispheres
78.9
2140
Male, age 76, both hemispheres
58.4
Pretectal area nTPM: 84.1
2007
Male, age 72, unknown
123.8
1817
Female, age 42, unknown
122.7
2316
Male, age 76, right hemisphere
98.3
1815
Male, age 53, unknown
89.3
1816
Male, age 51, unknown
86.2
2667
Female, age 75, unknown
79.5
1944
Female, age 72, unknown
79.3
2224
Female, age 72, unknown
73.8
2825
Male, age 18, unknown
65.6
2273
Male, age 74, both hemispheres
60.6
2407
Male, age 75, both hemispheres
46.0
Red nucleus nTPM: 138.3
2769
Male, age 72, unknown
170.9
2588
Male, age 74, left hemisphere
167.7
2227
Male, age 72, unknown
164.7
1954
Female, age 42, unknown
161.6
1904
Male, age 53, unknown
152.6
1821
Female, age 72, unknown
139.8
2785
Male, age 18, unknown
138.4
2503
Female, age 72, unknown
137.3
1865
Male, age 51, unknown
119.3
2823
Male, age 76, right hemisphere
116.5
2584
Male, age 75, left hemisphere
95.6
2725
Female, age 75, unknown
95.6
Substantia nigra nTPM: 90.0
2665
Male, age 74, both hemispheres
163.2
1851
Male, age 51, unknown
106.6
1916
Female, age 42, unknown
101.6
1889
Female, age 72, unknown
96.3
2590
Female, age 75, unknown
80.9
2583
Male, age 75, right hemisphere
77.8
2699
Male, age 18, unknown
76.5
1941
Male, age 53, unknown
74.6
2409
Female, age 72, unknown
65.4
2241
Male, age 72, unknown
57.4
Superior colliculus nTPM: 90.6
2668
Female, age 75, unknown
118.0
2587
Male, age 74, left hemisphere
108.3
2087
Female, age 72, unknown
107.8
1995
Male, age 72, unknown
97.4
2261
Male, age 18, unknown
91.3
1913
Female, age 42, unknown
85.4
1796
Male, age 53, unknown
83.5
1839
Male, age 51, unknown
83.4
1895
Male, age 76, right hemisphere
72.3
2664
Male, age 75, both hemispheres
59.0
Ventral tegmental area nTPM: 98.2
1942
Male, age 51, unknown
104.7
2021
Male, age 53, unknown
103.8
2223
Female, age 72, unknown
100.3
2410
Female, age 72, unknown
96.1
2218
Male, age 76, both hemispheres
94.5
1915
Female, age 42, unknown
89.7
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
200.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 200.5
Samples: 139
Max nTPM: 882.6
Min nTPM: 44.6
Std nTPM: 138.3
Median nTPM: 162.6
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
882.6
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
851.6
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
689.9
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
620.8
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
566.6
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
491.3
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
484.4
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
460.4
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
451.3
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
399.3
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
396.7
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
394.2
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
380.4
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
369.8
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
349.1
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
331.1
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
326.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
308.7
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
303.5
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
300.0
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
275.1
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
270.6
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
268.5
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
263.5
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
260.3
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
260.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
255.2
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
247.3
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
246.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
241.7
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
241.6
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
241.4
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
237.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
234.2
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
234.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
229.1
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
228.3
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
226.8
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
225.0
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
224.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
224.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
218.2
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
217.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
217.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
216.7
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
216.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
215.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
213.2
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
211.8
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
211.3
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
206.6
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
204.9
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
203.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
203.1
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
201.9
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
201.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
197.8
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
197.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
191.4
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
188.6
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
184.6
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
179.9
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
179.7
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
175.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
173.7
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
170.6
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
169.6
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
168.9
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
167.8
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
162.6
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
161.8
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
161.7
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
161.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
160.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
159.1
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
157.1
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
154.5
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
153.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
151.5
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
151.0
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
147.2
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
146.2
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
144.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
144.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
141.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
141.2
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
138.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
138.4
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
134.3
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
132.8
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
130.4
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
129.6
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
128.3
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
127.4
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
126.8
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
122.7
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
122.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
120.6
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
119.5
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
119.1
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
116.6
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
116.4
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
112.3
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
111.3
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
111.1
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
110.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
108.7
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
108.1
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
107.3
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
105.1
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
101.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
99.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
98.6
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
98.6
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
98.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
97.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
94.6
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
92.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
89.0
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
87.6
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
86.1
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
84.8
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
82.3
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
82.1
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
81.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
80.4
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
79.9
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
77.2
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
76.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
76.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
75.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
74.5
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
74.1
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
74.1
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
71.3
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
68.7
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
64.6
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
64.5
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
44.6
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
18.9
Mouse sample
Sample description
nTPM
Midbrain nTPM: 18.9
Samples: 4
Max nTPM: 24.1
Min nTPM: 16.1
Sample A
Male
24.1
Sample B
Male
18.4
Sample C
Female
16.1
Sample D
Female
17.1
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.