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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
173.7
nTPM
HPA Brain:
96.1
nTPM
GTEx:
173.7
nTPM
FANTOM5:
60.9
Scaled Tags Per Million
Pig:
26.7
nTPM
Mouse:
24.1
nTPM
Allen mouse:
3.0
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody CAB002607
Glial cells
Not detected
Neuronal cells
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
96.1
Sample id
Sample description
nTPM
Hippocampus nTPM: 86.4
2529
Female, age 94, left hemisphere
112.6
1911
Female, age 85, right hemisphere
95.6
1898
Male, age 80, left hemisphere
86.2
2621
Female, age 67, right hemisphere
80.7
2148
Female, age 91, left hemisphere
73.2
1855
Male, age 76, left hemisphere
70.2
Dentate gyrus nTPM: 88.5
2530
Female, age 94, left hemisphere
146.4
2531
Female, age 67, both hemispheres
97.6
2010
Male, age 76, both hemispheres
91.3
2528
Male, age 74, both hemispheres
77.0
1927
Female, age 91, both hemispheres
63.4
2246
Female, age 85, both hemispheres
55.1
Entorhinal gyrus nTPM: 71.3
1787
Male, age 76, left hemisphere
92.3
2686
Male, age 75, right hemisphere
85.3
2117
Female, age 91, right hemisphere
73.7
2764
Male, age 80, right hemisphere
63.0
2613
Female, age 94, left hemisphere
59.0
1938
Female, age 85, left hemisphere
54.5
Hippocampus, CA1 nTPM: 73.5
2527
Male, age 74, both hemispheres
86.6
2082
Female, age 91, right hemisphere
77.4
2749
Male, age 80, left hemisphere
70.4
2045
Male, age 76, both hemispheres
68.9
1873
Female, age 85, both hemispheres
63.9
Hippocampus, CA2 nTPM: 96.1
1963
Male, age 80, left hemisphere
123.1
2437
Female, age 94, left hemisphere
117.9
2249
Male, age 74, both hemispheres
103.2
2113
Female, age 91, right hemisphere
92.3
1892
Male, age 76, both hemispheres
72.6
1940
Female, age 85, left hemisphere
67.3
Hippocampus, CA3 nTPM: 94.7
2861
Female, age 67, both hemispheres
154.1
1867
Male, age 76, both hemispheres
105.8
2436
Male, age 74, both hemispheres
98.9
2137
Male, age 80, left hemisphere
73.1
1891
Female, age 85, both hemispheres
69.1
2620
Female, age 94, left hemisphere
67.2
Parahippocampal cortex nTPM: 65.7
2018
Male, age 76, both hemispheres
117.5
2622
Female, age 67, right hemisphere
73.3
2245
Female, age 91, both hemispheres
67.7
1990
Female, age 91, right hemisphere
66.2
2692
Male, age 74, both hemispheres
60.9
2532
Female, age 72, left hemisphere
59.5
2250
Female, age 67, right hemisphere
56.2
1933
Female, age 85, both hemispheres
52.9
1850
Male, age 80, both hemispheres
51.9
2693
Female, age 94, both hemispheres
50.3
Perirhinal gyrus nTPM: 55.8
1794
Male, age 80, right hemisphere
66.6
1841
Female, age 85, right hemisphere
60.4
2521
Female, age 94, right hemisphere
55.7
2848
Male, age 76, right hemisphere
49.1
1847
Female, age 91, left hemisphere
47.2
Subiculum nTPM: 72.2
2042
Male, age 76, both hemispheres
98.3
2619
Male, age 74, both hemispheres
78.7
2438
Female, age 94, left hemisphere
66.1
1977
Female, age 85, both hemispheres
65.2
2729
Female, age 91, right hemisphere
63.6
1901
Male, age 80, both hemispheres
61.5
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
173.7
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 173.7
Samples: 197
Max nTPM: 901.7
Min nTPM: 29.0
Std nTPM: 113.6
Median nTPM: 147.8
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
901.7
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
574.2
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
469.2
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
461.0
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
460.9
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
409.6
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
407.3
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
401.5
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
397.5
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
394.4
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
382.7
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
381.8
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
379.4
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
357.8
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
346.9
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
335.4
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
332.8
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
329.6
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
327.9
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
326.9
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
325.7
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
317.7
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
314.1
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
310.2
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
308.7
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
297.4
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
294.4
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
293.0
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
287.1
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
286.7
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
284.2
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
275.1
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
262.9
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
252.0
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
250.5
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
249.8
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
249.0
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
248.5
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
248.1
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
245.6
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
243.9
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
242.7
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
241.5
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
239.0
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
235.6
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
231.7
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
225.2
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
224.4
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
223.8
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
221.6
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
221.5
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
221.4
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
218.5
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
217.0
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
214.4
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
211.7
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
206.1
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
205.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
198.9
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
196.2
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
194.3
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
194.3
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
190.3
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
188.3
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
187.2
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
186.2
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
182.8
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
182.0
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
180.6
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
180.6
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
178.3
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
175.6
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
175.0
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
174.9
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
173.6
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
172.7
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
172.4
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
171.8
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
169.8
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
168.3
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
167.5
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
167.4
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
166.7
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
166.4
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
163.6
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
163.4
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
163.3
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
159.4
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
158.2
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
157.9
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
157.4
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
156.7
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
156.3
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
154.3
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
153.9
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
152.1
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
148.7
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
148.5
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
147.8
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
147.2
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
147.0
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
146.4
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
144.8
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
142.8
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
141.9
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
137.9
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
137.9
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
137.7
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
136.4
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
136.2
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
135.7
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
135.0
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
134.2
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
134.0
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
132.4
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
132.4
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
132.0
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
131.7
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
130.5
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
126.9
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
124.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
123.6
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
123.4
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
123.1
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
122.3
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
119.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
118.7
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
116.5
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
114.0
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
113.9
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
111.7
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
111.3
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
111.2
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
110.9
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
108.0
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
107.9
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
107.3
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
106.5
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
105.2
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
102.9
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
102.2
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
101.7
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
101.3
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
100.0
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
99.9
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
97.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
97.8
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
94.2
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
93.9
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
92.0
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
91.9
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
91.3
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
89.9
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
89.1
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
87.7
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
87.7
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
87.7
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
84.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
84.3
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
81.3
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
79.7
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
77.2
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
77.0
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
75.9
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
73.2
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
71.5
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
71.3
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
71.2
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
69.8
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
69.8
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
68.2
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
67.4
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
66.4
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
65.7
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
65.1
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
64.4
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
62.0
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
60.8
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
60.7
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
60.0
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
58.6
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
56.5
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
55.9
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
55.8
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
55.5
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
55.0
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
54.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
52.3
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
50.5
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
49.2
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
45.0
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
44.2
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
40.2
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
39.0
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
31.2
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
29.1
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
29.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
24.1
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 24.1
Samples: 4
Max nTPM: 27.2
Min nTPM: 21.9
Sample A
Male
27.2
Sample B
Male
24.6
Sample C
Female
22.8
Sample D
Female
21.9
Hippocampal formation nTPM: 23.2
Samples: 4
Max nTPM: 24.1
Min nTPM: 21.8
Sample A
Male
23.1
Sample B
Male
24.1
Sample C
Female
21.8
Sample D
Female
23.7
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.