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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
307.3
nTPM
HPA Brain:
434.9
nTPM
GTEx:
307.3
nTPM
FANTOM5:
365.8
Scaled Tags Per Million
Pig:
204.3
nTPM
Mouse:
94.6
nTPM
Allen mouse:
0.5
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
434.9
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 368.1
1833
Male, age 53, unknown
444.9
2666
Male, age 74, left hemisphere
443.4
1830
Male, age 51, unknown
434.3
2411
Female, age 72, unknown
413.9
1870
Female, age 42, unknown
376.1
2019
Male, age 18, unknown
366.0
2586
Male, age 75, left hemisphere
338.8
2828
Female, age 72, unknown
299.1
2219
Male, age 76, both hemispheres
287.4
1827
Male, age 72, unknown
276.8
Dorsal raphe nucleus nTPM: 273.3
2750
Male, age 76, both hemispheres
356.9
2016
Female, age 72, unknown
317.1
1828
Male, age 53, unknown
281.9
2298
Female, age 72, unknown
207.0
2047
Male, age 72, unknown
203.4
Inferior colliculus nTPM: 280.3
2849
Male, age 72, unknown
304.4
1848
Female, age 42, unknown
277.9
1890
Male, age 53, unknown
271.1
2097
Female, age 72, unknown
267.8
Median raphe nucleus nTPM: 241.8
2220
Male, age 76, midline
241.8
Periaquaductal grey, anterior nTPM: 275.0
2502
Female, age 75, unknown
350.9
1947
Male, age 18, unknown
278.3
1795
Male, age 51, unknown
195.9
Periaquaductal grey, dorsal nTPM: 254.4
2464
Female, age 72, unknown
332.9
1831
Male, age 72, unknown
251.1
1840
Male, age 53, unknown
221.1
2850
Male, age 76, both hemispheres
212.4
Periaquaductal grey, lateral nTPM: 223.4
2053
Male, age 18, unknown
269.7
2272
Male, age 74, both hemispheres
206.4
2140
Male, age 76, both hemispheres
194.1
Pretectal area nTPM: 255.8
1815
Male, age 53, unknown
347.9
2316
Male, age 76, right hemisphere
314.9
1817
Female, age 42, unknown
292.0
2007
Male, age 72, unknown
285.1
2825
Male, age 18, unknown
270.7
2407
Male, age 75, both hemispheres
250.3
2224
Female, age 72, unknown
248.4
1944
Female, age 72, unknown
218.6
1816
Male, age 51, unknown
215.2
2667
Female, age 75, unknown
193.5
2273
Male, age 74, both hemispheres
177.3
Red nucleus nTPM: 434.9
2503
Female, age 72, unknown
529.7
1904
Male, age 53, unknown
475.7
1821
Female, age 72, unknown
467.6
1865
Male, age 51, unknown
461.2
2588
Male, age 74, left hemisphere
460.7
1954
Female, age 42, unknown
428.1
2227
Male, age 72, unknown
417.4
2769
Male, age 72, unknown
410.1
2823
Male, age 76, right hemisphere
401.8
2785
Male, age 18, unknown
394.6
2725
Female, age 75, unknown
389.9
2584
Male, age 75, left hemisphere
381.6
Substantia nigra nTPM: 329.9
2409
Female, age 72, unknown
442.6
2241
Male, age 72, unknown
377.9
1851
Male, age 51, unknown
356.2
2665
Male, age 74, both hemispheres
338.4
2699
Male, age 18, unknown
336.5
2590
Female, age 75, unknown
324.6
2583
Male, age 75, right hemisphere
300.5
1889
Female, age 72, unknown
282.6
1916
Female, age 42, unknown
277.2
1941
Male, age 53, unknown
262.6
Superior colliculus nTPM: 315.2
1913
Female, age 42, unknown
405.9
1995
Male, age 72, unknown
402.9
2587
Male, age 74, left hemisphere
382.4
1839
Male, age 51, unknown
357.2
2668
Female, age 75, unknown
339.6
1895
Male, age 76, right hemisphere
294.5
2664
Male, age 75, both hemispheres
255.3
1796
Male, age 53, unknown
244.8
2261
Male, age 18, unknown
237.0
2087
Female, age 72, unknown
232.1
Ventral tegmental area nTPM: 315.8
2410
Female, age 72, unknown
370.9
2223
Female, age 72, unknown
354.6
1942
Male, age 51, unknown
308.9
1915
Female, age 42, unknown
305.1
2021
Male, age 53, unknown
289.8
2218
Male, age 76, both hemispheres
265.8
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
307.3
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 307.3
Samples: 139
Max nTPM: 870.8
Min nTPM: 110.4
Std nTPM: 146.2
Median nTPM: 275.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
870.8
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
790.7
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
786.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
707.9
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
619.6
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
617.0
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
608.0
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
600.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
570.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
565.6
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
553.6
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
542.2
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
540.1
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
514.5
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
488.6
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
485.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
480.8
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
480.6
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
470.5
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
457.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
451.6
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
449.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
448.5
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
443.1
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
432.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
425.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
420.4
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
412.3
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
403.4
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
397.6
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
388.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
378.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
376.7
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
374.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
373.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
372.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
364.7
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
363.1
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
354.8
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
354.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
345.1
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
343.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
341.8
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
338.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
336.6
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
335.8
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
331.2
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
328.7
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
327.6
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
325.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
320.7
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
320.7
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
320.6
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
318.3
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
314.5
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
314.0
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
313.5
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
310.4
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
306.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
304.3
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
298.1
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
295.5
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
295.2
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
295.1
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
294.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
287.3
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
286.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
283.5
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
279.1
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
275.2
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
270.3
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
267.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
260.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
257.7
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
256.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
255.9
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
255.7
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
255.6
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
255.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
246.8
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
246.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
243.9
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
241.3
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
235.9
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
235.9
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
228.2
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
228.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
224.5
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
218.9
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
215.8
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
215.7
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
214.5
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
214.3
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
214.2
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
210.4
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
202.8
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
202.4
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
198.3
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
197.6
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
195.7
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
193.9
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
193.2
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
190.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
188.8
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
188.2
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
187.9
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
187.8
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
187.1
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
185.7
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
185.6
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
184.8
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
183.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
183.1
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
181.6
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
180.2
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
179.5
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
178.3
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
178.3
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
177.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
177.3
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
176.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
173.1
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
171.4
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
169.8
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
169.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
168.5
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
166.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
165.9
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
158.5
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
157.4
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
157.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
150.5
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
147.4
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
146.4
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
144.4
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
137.0
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
136.4
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
128.3
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
110.4
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
94.6
Mouse sample
Sample description
nTPM
Midbrain nTPM: 94.6
Samples: 4
Max nTPM: 98.1
Min nTPM: 90.7
Sample A
Male
92.2
Sample B
Male
97.4
Sample C
Female
98.1
Sample D
Female
90.7
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.