We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Low
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
246.9
nTPM
HPA Brain:
273.3
nTPM
GTEx:
246.9
nTPM
FANTOM5:
197.3
Scaled Tags Per Million
Pig:
153.7
nTPM
Mouse:
97.7
nTPM
Allen mouse:
1.2
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA003281
Antibody CAB011204
Glial cells
Not detected
Not detected
Neuronal cells
Not detected
Low
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
273.3
Sample id
Sample description
nTPM
Hippocampus nTPM: 236.7
2529
Female, age 94, left hemisphere
269.0
2621
Female, age 67, right hemisphere
254.9
1911
Female, age 85, right hemisphere
253.2
1898
Male, age 80, left hemisphere
234.1
1855
Male, age 76, left hemisphere
215.5
2148
Female, age 91, left hemisphere
193.5
Dentate gyrus nTPM: 247.6
2530
Female, age 94, left hemisphere
397.6
2010
Male, age 76, both hemispheres
272.3
2531
Female, age 67, both hemispheres
231.0
2246
Female, age 85, both hemispheres
225.2
1927
Female, age 91, both hemispheres
189.3
2528
Male, age 74, both hemispheres
169.9
Entorhinal gyrus nTPM: 243.3
2117
Female, age 91, right hemisphere
302.9
2686
Male, age 75, right hemisphere
297.5
1938
Female, age 85, left hemisphere
246.9
1787
Male, age 76, left hemisphere
211.8
2613
Female, age 94, left hemisphere
205.2
2764
Male, age 80, right hemisphere
195.6
Hippocampus, CA1 nTPM: 211.2
2749
Male, age 80, left hemisphere
231.8
1873
Female, age 85, both hemispheres
213.0
2082
Female, age 91, right hemisphere
206.9
2527
Male, age 74, both hemispheres
206.7
2045
Male, age 76, both hemispheres
197.6
Hippocampus, CA2 nTPM: 229.9
1963
Male, age 80, left hemisphere
311.1
2437
Female, age 94, left hemisphere
221.2
2113
Female, age 91, right hemisphere
218.8
1940
Female, age 85, left hemisphere
210.7
1892
Male, age 76, both hemispheres
209.6
2249
Male, age 74, both hemispheres
208.0
Hippocampus, CA3 nTPM: 201.2
1891
Female, age 85, both hemispheres
263.3
1867
Male, age 76, both hemispheres
240.2
2137
Male, age 80, left hemisphere
236.8
2861
Female, age 67, both hemispheres
179.3
2436
Male, age 74, both hemispheres
152.6
2620
Female, age 94, left hemisphere
135.1
Parahippocampal cortex nTPM: 230.9
2532
Female, age 72, left hemisphere
291.1
2692
Male, age 74, both hemispheres
265.6
2018
Male, age 76, both hemispheres
254.3
2245
Female, age 91, both hemispheres
237.1
1933
Female, age 85, both hemispheres
226.9
1850
Male, age 80, both hemispheres
226.5
1990
Female, age 91, right hemisphere
224.8
2622
Female, age 67, right hemisphere
214.0
2250
Female, age 67, right hemisphere
189.2
2693
Female, age 94, both hemispheres
179.4
Perirhinal gyrus nTPM: 193.1
2848
Male, age 76, right hemisphere
225.3
1841
Female, age 85, right hemisphere
200.0
1794
Male, age 80, right hemisphere
190.4
1847
Female, age 91, left hemisphere
177.0
2521
Female, age 94, right hemisphere
172.9
Subiculum nTPM: 273.3
2042
Male, age 76, both hemispheres
362.8
2438
Female, age 94, left hemisphere
332.7
1901
Male, age 80, both hemispheres
287.8
1977
Female, age 85, both hemispheres
259.0
2729
Female, age 91, right hemisphere
220.1
2619
Male, age 74, both hemispheres
177.6
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
246.9
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 246.9
Samples: 197
Max nTPM: 821.8
Min nTPM: 60.5
Std nTPM: 130.3
Median nTPM: 210.9
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
821.8
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
807.4
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
726.2
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
686.7
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
665.3
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
632.0
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
620.2
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
604.5
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
504.1
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
461.6
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
459.2
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
456.4
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
455.8
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
442.6
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
442.5
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
434.3
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
430.8
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
390.3
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
388.7
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
386.1
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
385.1
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
384.1
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
384.1
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
375.9
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
370.1
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
367.8
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
353.4
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
350.1
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
349.9
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
346.5
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
346.2
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
345.6
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
344.3
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
342.5
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
340.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
339.9
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
338.4
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
335.1
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
334.7
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
328.8
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
322.7
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
319.9
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
319.9
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
317.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
316.8
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
315.3
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
312.3
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
309.1
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
304.2
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
304.2
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
303.8
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
302.6
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
301.8
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
297.4
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
296.4
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
295.7
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
292.0
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
289.1
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
283.6
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
278.3
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
278.0
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
277.9
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
274.9
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
262.7
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
259.2
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
258.4
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
257.7
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
255.1
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
253.9
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
253.4
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
252.7
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
252.6
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
252.2
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
250.2
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
249.2
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
249.1
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
243.5
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
243.0
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
241.2
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
240.7
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
239.7
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
233.4
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
231.2
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
230.8
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
229.9
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
229.5
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
228.1
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
225.5
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
223.5
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
222.6
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
221.2
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
220.2
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
215.7
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
214.0
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
213.6
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
213.3
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
211.6
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
210.9
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
210.9
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
210.4
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
210.0
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
208.8
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
207.8
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
207.5
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
206.2
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
205.8
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
205.6
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
205.0
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
203.0
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
201.7
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
200.7
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
200.5
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
198.3
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
195.0
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
192.8
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
192.7
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
190.8
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
189.9
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
189.5
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
188.4
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
188.0
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
187.2
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
187.1
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
185.4
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
182.3
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
181.4
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
180.5
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
180.2
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
180.0
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
179.0
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
178.5
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
177.4
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
177.2
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
176.2
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
175.1
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
175.0
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
173.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
173.0
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
172.6
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
169.6
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
169.2
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
168.9
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
167.8
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
167.4
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
166.6
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
163.4
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
161.2
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
160.1
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
159.7
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
158.4
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
158.3
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
157.5
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
155.5
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
153.8
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
152.2
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
150.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
147.8
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
147.5
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
147.1
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
146.4
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
146.2
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
145.5
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
145.4
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
141.7
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
139.6
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
139.6
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
139.1
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
138.6
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
136.9
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
136.5
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
134.9
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
134.2
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
133.3
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
132.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
129.4
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
128.9
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
126.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
125.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
123.8
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
122.3
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
121.1
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
120.6
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
120.2
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
116.2
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
113.7
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
113.3
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
112.8
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
111.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
95.4
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
95.0
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
93.1
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
90.2
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
88.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
87.4
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
83.1
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
78.3
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
60.5
Show allShow less
HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
97.7
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 85.0
Samples: 4
Max nTPM: 86.6
Min nTPM: 82.6
Sample A
Male
86.5
Sample B
Male
82.6
Sample C
Female
86.6
Sample D
Female
84.4
Hippocampal formation nTPM: 97.7
Samples: 4
Max nTPM: 105.1
Min nTPM: 88.2
Sample A
Male
100.3
Sample B
Male
97.0
Sample C
Female
105.1
Sample D
Female
88.2
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.