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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
104.5
nTPM
HPA Brain:
103.0
nTPM
GTEx:
104.5
nTPM
FANTOM5:
126.0
Scaled Tags Per Million
Mouse:
101.7
nTPM
Allen mouse:
0.2
Expression energy
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
103.0
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 85.0
2828
Female, age 72, unknown
131.8
2586
Male, age 75, left hemisphere
116.9
2666
Male, age 74, left hemisphere
87.8
1827
Male, age 72, unknown
85.8
1870
Female, age 42, unknown
81.9
2411
Female, age 72, unknown
78.3
1833
Male, age 53, unknown
75.4
1830
Male, age 51, unknown
70.9
2219
Male, age 76, both hemispheres
63.7
2019
Male, age 18, unknown
57.8
Dorsal raphe nucleus nTPM: 87.8
2047
Male, age 72, unknown
103.9
1828
Male, age 53, unknown
96.0
2016
Female, age 72, unknown
91.5
2298
Female, age 72, unknown
77.5
2750
Male, age 76, both hemispheres
70.0
Inferior colliculus nTPM: 98.7
1848
Female, age 42, unknown
109.2
1890
Male, age 53, unknown
99.8
2097
Female, age 72, unknown
94.5
2849
Male, age 72, unknown
91.4
Median raphe nucleus nTPM: 57.0
2220
Male, age 76, midline
57.0
Periaquaductal grey, anterior nTPM: 90.3
1947
Male, age 18, unknown
100.8
1795
Male, age 51, unknown
89.3
2502
Female, age 75, unknown
80.9
Periaquaductal grey, dorsal nTPM: 84.8
2464
Female, age 72, unknown
98.6
1840
Male, age 53, unknown
88.7
2850
Male, age 76, both hemispheres
77.9
1831
Male, age 72, unknown
74.2
Periaquaductal grey, lateral nTPM: 83.4
2053
Male, age 18, unknown
103.7
2140
Male, age 76, both hemispheres
92.4
2272
Male, age 74, both hemispheres
54.0
Pretectal area nTPM: 83.2
1817
Female, age 42, unknown
103.2
2825
Male, age 18, unknown
100.0
2667
Female, age 75, unknown
95.9
2316
Male, age 76, right hemisphere
93.0
1944
Female, age 72, unknown
89.3
1815
Male, age 53, unknown
87.1
1816
Male, age 51, unknown
86.9
2224
Female, age 72, unknown
74.9
2007
Male, age 72, unknown
68.5
2407
Male, age 75, both hemispheres
58.5
2273
Male, age 74, both hemispheres
58.3
Red nucleus nTPM: 103.0
2503
Female, age 72, unknown
123.4
1954
Female, age 42, unknown
121.7
2588
Male, age 74, left hemisphere
117.9
1821
Female, age 72, unknown
116.1
2227
Male, age 72, unknown
111.6
2769
Male, age 72, unknown
110.9
2823
Male, age 76, right hemisphere
108.6
1865
Male, age 51, unknown
100.4
1904
Male, age 53, unknown
98.3
2725
Female, age 75, unknown
97.5
2584
Male, age 75, left hemisphere
71.8
2785
Male, age 18, unknown
57.8
Substantia nigra nTPM: 92.9
2699
Male, age 18, unknown
123.2
1916
Female, age 42, unknown
110.7
1851
Male, age 51, unknown
97.9
2241
Male, age 72, unknown
91.6
1889
Female, age 72, unknown
91.4
2409
Female, age 72, unknown
88.5
2665
Male, age 74, both hemispheres
88.3
2583
Male, age 75, right hemisphere
81.7
1941
Male, age 53, unknown
78.7
2590
Female, age 75, unknown
77.2
Superior colliculus nTPM: 84.9
2668
Female, age 75, unknown
98.7
2664
Male, age 75, both hemispheres
94.5
2087
Female, age 72, unknown
93.4
2261
Male, age 18, unknown
88.6
1796
Male, age 53, unknown
87.0
1839
Male, age 51, unknown
82.1
1995
Male, age 72, unknown
81.9
1895
Male, age 76, right hemisphere
80.4
1913
Female, age 42, unknown
71.5
2587
Male, age 74, left hemisphere
71.1
Ventral tegmental area nTPM: 79.2
2410
Female, age 72, unknown
93.1
1915
Female, age 42, unknown
88.0
1942
Male, age 51, unknown
83.9
2021
Male, age 53, unknown
79.7
2223
Female, age 72, unknown
66.9
2218
Male, age 76, both hemispheres
63.6
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
104.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 104.5
Samples: 139
Max nTPM: 240.8
Min nTPM: 17.1
Std nTPM: 45.7
Median nTPM: 98.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
240.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
231.5
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
224.1
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
220.2
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
201.4
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
187.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
183.2
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
179.2
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
173.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
170.4
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
169.0
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
165.5
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
164.7
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
164.3
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
163.9
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
161.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
160.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
160.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
156.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
153.1
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
152.2
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
150.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
150.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
148.2
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
147.4
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
147.1
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
143.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
143.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
142.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
142.2
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
141.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
136.0
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
135.1
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
134.7
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
134.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
133.7
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
132.9
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
132.2
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
132.1
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
132.0
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
129.9
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
128.7
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
128.6
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
128.0
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
127.0
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
126.7
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
126.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
126.1
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
124.5
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
123.7
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
122.1
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
121.1
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
118.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
115.8
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
114.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
114.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
114.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
111.9
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
111.4
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
111.1
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
110.1
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
109.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
108.4
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
108.3
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
108.2
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
103.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
101.9
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
100.2
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
100.1
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
98.7
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
97.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
97.6
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
96.5
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
95.7
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
94.6
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
93.3
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
92.4
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
91.9
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
90.8
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
89.2
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
89.0
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
88.6
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
86.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
86.0
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
85.2
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
84.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
84.7
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
82.1
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
80.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
80.5
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
80.3
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
79.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
79.3
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
79.1
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
78.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
76.9
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
76.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
74.7
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
73.3
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
72.8
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
72.7
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
72.7
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
71.4
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
71.0
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
68.6
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
68.6
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
67.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
67.0
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
66.1
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
65.3
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
65.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
64.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
60.9
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
60.5
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
54.9
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
54.6
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
54.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
53.9
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
53.0
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
52.6
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
52.1
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
51.4
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
49.7
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
49.1
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
48.7
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
47.9
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
47.4
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
47.1
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
44.5
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
43.9
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
42.4
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
42.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
40.6
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
37.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
36.9
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
34.1
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
31.9
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
27.3
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
17.1
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
101.7
Mouse sample
Sample description
nTPM
Midbrain nTPM: 101.7
Samples: 4
Max nTPM: 117.1
Min nTPM: 93.0
Sample A
Male
117.1
Sample B
Male
93.7
Sample C
Female
93.0
Sample D
Female
103.0
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.