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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
OGFOD3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
77.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
71.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
50.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
49.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
48.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
48.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
47.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
46.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
46.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
45.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
44.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
39.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
39.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
39.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
39.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
37.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
37.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
37.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
36.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
35.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
35.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
34.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
33.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
33.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
33.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
32.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
32.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
31.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
31.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
31.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
30.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
30.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
30.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
29.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
29.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
29.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
29.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
29.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
28.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
28.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
27.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
27.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
27.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
26.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
26.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
26.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
26.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
26.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
26.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
26.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
26.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
25.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
25.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
25.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
25.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
25.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
24.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
24.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
24.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
24.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
24.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
24.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
24.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
24.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
24.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
24.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
23.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
23.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
23.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
23.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
23.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
23.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
23.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
22.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
22.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
22.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
22.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
22.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
22.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
22.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
22.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
22.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
22.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
22.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
21.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
21.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
21.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
21.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
21.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
21.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
21.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
21.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
21.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
21.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
21.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
21.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
21.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
21.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
21.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
21.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
21.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
20.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
20.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
20.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
20.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
20.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
20.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
20.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
20.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
20.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
20.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
20.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
20.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
19.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
19.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
19.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
19.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
19.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
19.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
19.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
19.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
19.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
19.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
19.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
18.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
18.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
18.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
18.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
18.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
18.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
18.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
18.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
18.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
18.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
18.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
18.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
18.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
17.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
17.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
17.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
17.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
17.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
17.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
17.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
17.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
17.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
17.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
17.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
17.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
17.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
17.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
17.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
17.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
17.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
17.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
17.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
17.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
17.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
17.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
17.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
16.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
16.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
16.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
16.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
16.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
16.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
16.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
16.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
16.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
16.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
16.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
16.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
16.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
16.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
16.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
16.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
16.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
16.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
16.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
16.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
16.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
15.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
15.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
15.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
15.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
15.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
15.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
15.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
15.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
15.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
15.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
15.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
15.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
14.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
14.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
14.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
14.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
14.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
14.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
14.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
14.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
14.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
14.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
14.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
14.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
14.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
13.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
13.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
13.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
13.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
13.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
13.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
13.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
13.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
13.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
13.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
13.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
13.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
13.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
12.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
12.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
12.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
12.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
12.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
12.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
12.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
12.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
11.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
11.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
11.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
10.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
10.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
9.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
9.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
7.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
865
Tumor
1.0
367
Tumor
0.9
533
Tumor
0.9
327
Tumor
0.9
351
Tumor
0.9
721
Tumor
0.8
722
Normal
0.8
257
Tumor
0.7
222
Normal
0.7
387
Tumor
0.7
491
Tumor
0.7
423
Tumor
0.7
745
Tumor
0.7
435
Tumor
0.7
192
Normal
0.6
363
Tumor
0.6
353
Tumor
0.6
877
Tumor
0.6
221
Tumor
0.5
663
Tumor
0.5
431
Tumor
0.5
1043
Tumor
0.5
123
Tumor
0.5
361
Tumor
0.5
147
Tumor
0.5
714
Normal
0.5
484
Normal
0.5
137
Tumor
0.5
357
Tumor
0.5
737
Tumor
0.5
617
Tumor
0.5
494
Normal
0.4
755
Tumor
0.4
953
Tumor
0.4
331
Tumor
0.4
497
Tumor
0.4
343
Tumor
0.4
567
Tumor
0.4
983
Tumor
0.4
127
Tumor
0.4
467
Tumor
0.3
191
Tumor
0.3
217
Tumor
0.3
498
Normal
0.3
113
Tumor
0.3
388
Normal
0.3
393
Tumor
0.3
416
Normal
0.3
635
Tumor
0.3
785
Tumor
0.3
615
Tumor
0.3
1027
Tumor
0.3
271
Tumor
0.3
214
Normal
0.3
525
Tumor
0.3
355
Tumor
0.3
851
Tumor
0.3
125
Tumor
0.3
364
Normal
0.3
283
Tumor
0.3
114
Normal
0.3
1025
Tumor
0.3
218
Normal
0.3
354
Normal
0.2
386
Normal
0.2
874
Normal
0.2
911
Tumor
0.2
396
Normal
0.2
145
Tumor
0.2
161
Tumor
0.2
487
Tumor
0.2
277
Tumor
0.2
641
Tumor
0.2
445
Tumor
0.2
925
Tumor
0.2
341
Tumor
0.2
451
Tumor
0.2
433
Tumor
0.2
492
Normal
0.2
394
Normal
0.2
777
Tumor
0.2
186
Normal
0.2
297
Tumor
0.2
112
Tumor
0.2
328
Normal
0.2
462
Normal
0.2
858
Normal
0.1
647
Tumor
0.1
554
Normal
0.1
135
Tumor
0.1
383
Tumor
0.1
358
Normal
0.1
883
Tumor
0.1
444
Normal
0.1
375
Tumor
0.1
267
Tumor
0.1
443
Tumor
0.1
1044
Normal
0.1
392
Normal
0.1
513
Tumor
0.1
313
Tumor
0.1
873
Tumor
0.1
148
Normal
0.1
715
Tumor
0.1
132
Normal
0.1
285
Tumor
0.1
172
Normal
0.1
146
Normal
0.1
824
Normal
0.1
482
Normal
0.1
534
Normal
0.1
488
Normal
0.1
124
Normal
0.1
278
Normal
0.1
311
Tumor
0.1
574
Normal
0.1
128
Normal
0.1
921
Tumor
0.1
395
Tumor
0.1
473
Tumor
0.1
857
Tumor
0.1
955
Tumor
0.1
672
Normal
0.1
213
Tumor
0.1
642
Normal
0.1
868
Normal
0.1
1046
Normal
0.1
852
Normal
0.0
111
Normal
0.0
553
Tumor
0.0
913
Tumor
0.0
436
Normal
0.0
126
Normal
0.0
365
Tumor
0.0
818
Normal
0.0
258
Normal
0.0
618
Normal
0.0
616
Normal
0.0
272
Normal
0.0
352
Normal
0.0
261
Tumor
0.0
427
Tumor
0.0
432
Normal
0.0
446
Normal
0.0
528
Normal
0.0
452
Normal
0.0
1042
Normal
0.0
636
Normal
0.0
344
Normal
0.0
138
Normal
0.0
342
Normal
0.0
461
Tumor
0.0
434
Normal
0.0
421
Tumor
0.0
526
Normal
0.0
524
Normal
0.0
136
Normal
0.0
937
Tumor
0.0
665
Tumor
0.0
493
Tumor
0.0
1028
Normal
0.0
188
Normal
0.0
535
Tumor
0.0
472
Normal
0.0
864
Normal
0.0
778
Normal
0.0
391
Tumor
0.0
915
Tumor
0.0
816
Normal
0.0
884
Normal
0.0
536
Normal
0.0
195
Tumor
0.0
1031
Tumor
0.0
813
Tumor
-0.1
463
Tumor
-0.1
298
Normal
-0.1
514
Normal
-0.1
728
Normal
-0.1
131
Tumor
-0.1
976
Normal
-0.1
481
Tumor
-0.1
882
Normal
-0.1
223
Tumor
-0.1
464
Normal
-0.1
477
Tumor
-0.1
878
Normal
-0.1
162
Normal
-0.1
756
Normal
-0.1
563
Tumor
-0.1
142
Normal
-0.1
1045
Tumor
-0.1
483
Tumor
-0.1
517
Tumor
-0.1
424
Normal
-0.1
866
Normal
-0.1
573
Tumor
-0.1
1021
Tumor
-0.1
466
Normal
-0.1
957
Tumor
-0.1
912
Normal
-0.1
546
Normal
-0.1
478
Normal
-0.1
187
Tumor
-0.1
964
Normal
-0.1
262
Normal
-0.1
564
Normal
-0.1
685
Tumor
-0.1
1022
Normal
-0.1
474
Normal
-0.1
362
Normal
-0.1
557
Tumor
-0.1
196
Normal
-0.1
312
Normal
-0.1
662
Normal
-0.1
538
Normal
-0.1
185
Tumor
-0.1
447
Tumor
-0.1
867
Tumor
-0.1
455
Tumor
-0.1
428
Normal
-0.1
1026
Normal
-0.1
515
Tumor
-0.1
863
Tumor
-0.1
1032
Normal
-0.1
448
Normal
-0.1
227
Tumor
-0.1
568
Normal
-0.1
518
Normal
-0.2
471
Tumor
-0.2
786
Normal
-0.2
738
Normal
-0.2
314
Normal
-0.2
881
Tumor
-0.2
422
Normal
-0.2
968
Normal
-0.2
648
Normal
-0.2
815
Tumor
-0.2
698
Normal
-0.2
456
Normal
-0.2
384
Normal
-0.2
516
Normal
-0.2
468
Normal
-0.2
527
Tumor
-0.2
862
Normal
-0.2
411
Tumor
-0.2
332
Normal
-0.2
956
Normal
-0.2
426
Normal
-0.2
914
Normal
-0.2
664
Normal
-0.2
1041
Tumor
-0.2
268
Normal
-0.2
385
Tumor
-0.2
716
Normal
-0.2
628
Normal
-0.2
741
Tumor
-0.2
141
Tumor
-0.2
944
Normal
-0.2
696
Normal
-0.2
366
Normal
-0.2
465
Tumor
-0.2
414
Normal
-0.2
627
Tumor
-0.3
171
Tumor
-0.3
412
Normal
-0.3
545
Tumor
-0.3
571
Tumor
-0.3
558
Normal
-0.3
666
Normal
-0.3
978
Normal
-0.3
232
Normal
-0.3
537
Tumor
-0.3
746
Normal
-0.3
572
Normal
-0.3
951
Tumor
-0.3
916
Normal
-0.3
686
Normal
-0.3
823
Tumor
-0.3
523
Tumor
-0.3
284
Normal
-0.3
744
Normal
-0.3
954
Normal
-0.3
727
Tumor
-0.3
938
Normal
-0.3
231
Tumor
-0.3
943
Tumor
-0.3
671
Tumor
-0.3
963
Tumor
-0.3
965
Tumor
-0.3
958
Normal
-0.3
286
Normal
-0.4
981
Tumor
-0.4
861
Tumor
-0.4
356
Normal
-0.4
415
Tumor
-0.4
661
Tumor
-0.4
224
Normal
-0.4
211
Tumor
-0.4
966
Normal
-0.4
817
Tumor
-0.4
1014
Normal
-0.4
724
Normal
-0.4
742
Normal
-0.4
743
Tumor
-0.5
228
Normal
-0.5
723
Tumor
-0.5
212
Normal
-0.5
814
Normal
-0.5
926
Normal
-0.5
368
Normal
-0.5
713
Tumor
-0.5
922
Normal
-0.6
952
Normal
-0.6
977
Tumor
-0.6
982
Normal
-0.6
697
Tumor
-0.6
376
Normal
-0.6
975
Tumor
-0.7
918
Normal
-0.7
425
Tumor
-0.7
923
Tumor
-0.7
917
Tumor
-0.7
984
Normal
-0.7
695
Tumor
-0.7
1013
Tumor
-0.8
1015
Tumor
-0.9
1016
Normal
-1.0
413
Tumor
-1.0
967
Tumor
-1.1
924
Normal
-1.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
