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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
58.1
nTPM
HPA Brain:
46.3
nTPM
GTEx:
58.1
nTPM
FANTOM5:
22.5
Scaled Tags Per Million
Pig:
40.1
nTPM
Mouse:
38.3
nTPM
Allen mouse:
13.9
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
46.3
Sample id
Sample description
nTPM
Hippocampus nTPM: 35.2
1911
Female, age 85, right hemisphere
43.4
2621
Female, age 67, right hemisphere
36.5
1898
Male, age 80, left hemisphere
36.3
2529
Female, age 94, left hemisphere
34.2
2148
Female, age 91, left hemisphere
32.1
1855
Male, age 76, left hemisphere
28.9
Dentate gyrus nTPM: 39.0
2530
Female, age 94, left hemisphere
62.2
2528
Male, age 74, both hemispheres
39.2
2010
Male, age 76, both hemispheres
37.2
2246
Female, age 85, both hemispheres
32.8
2531
Female, age 67, both hemispheres
32.7
1927
Female, age 91, both hemispheres
29.6
Entorhinal gyrus nTPM: 39.9
2117
Female, age 91, right hemisphere
69.7
2764
Male, age 80, right hemisphere
50.8
1938
Female, age 85, left hemisphere
31.5
2613
Female, age 94, left hemisphere
30.7
1787
Male, age 76, left hemisphere
29.3
2686
Male, age 75, right hemisphere
27.2
Hippocampus, CA1 nTPM: 29.3
1873
Female, age 85, both hemispheres
34.5
2527
Male, age 74, both hemispheres
34.0
2749
Male, age 80, left hemisphere
32.2
2082
Female, age 91, right hemisphere
25.2
2045
Male, age 76, both hemispheres
20.5
Hippocampus, CA2 nTPM: 39.6
1963
Male, age 80, left hemisphere
53.9
2249
Male, age 74, both hemispheres
44.5
1940
Female, age 85, left hemisphere
43.3
2437
Female, age 94, left hemisphere
37.4
2113
Female, age 91, right hemisphere
30.2
1892
Male, age 76, both hemispheres
28.2
Hippocampus, CA3 nTPM: 30.0
1891
Female, age 85, both hemispheres
49.4
2620
Female, age 94, left hemisphere
38.6
1867
Male, age 76, both hemispheres
27.0
2436
Male, age 74, both hemispheres
26.1
2137
Male, age 80, left hemisphere
20.8
2861
Female, age 67, both hemispheres
18.1
Parahippocampal cortex nTPM: 29.7
2532
Female, age 72, left hemisphere
40.0
1990
Female, age 91, right hemisphere
38.1
2692
Male, age 74, both hemispheres
37.2
2018
Male, age 76, both hemispheres
33.8
1850
Male, age 80, both hemispheres
31.3
1933
Female, age 85, both hemispheres
30.5
2245
Female, age 91, both hemispheres
26.9
2693
Female, age 94, both hemispheres
23.3
2250
Female, age 67, right hemisphere
20.6
2622
Female, age 67, right hemisphere
15.0
Perirhinal gyrus nTPM: 27.8
2521
Female, age 94, right hemisphere
32.9
1794
Male, age 80, right hemisphere
31.4
1841
Female, age 85, right hemisphere
27.5
2848
Male, age 76, right hemisphere
27.1
1847
Female, age 91, left hemisphere
20.0
Subiculum nTPM: 46.3
2042
Male, age 76, both hemispheres
58.3
1901
Male, age 80, both hemispheres
54.0
1977
Female, age 85, both hemispheres
52.7
2438
Female, age 94, left hemisphere
41.0
2729
Female, age 91, right hemisphere
36.2
2619
Male, age 74, both hemispheres
35.5
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
58.1
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 58.1
Samples: 197
Max nTPM: 243.4
Min nTPM: 4.2
Std nTPM: 33.2
Median nTPM: 50.6
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
243.4
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
194.5
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
176.8
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
162.1
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
147.9
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
142.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
124.4
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
123.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
121.6
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
117.5
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
115.3
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
111.6
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
109.4
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
108.2
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
106.8
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
106.6
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
105.6
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
104.7
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
102.4
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
101.7
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
100.0
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
99.3
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
96.2
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
93.9
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
90.8
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
90.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
90.4
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
88.9
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
87.9
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
87.6
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
87.0
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
86.4
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
86.1
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
86.0
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
84.6
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
82.9
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
82.6
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
82.2
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
79.6
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
78.4
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
77.5
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
77.1
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
74.9
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
73.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
73.9
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
73.8
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
73.1
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
72.8
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
72.4
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
70.8
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
70.4
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
69.8
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
68.3
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
68.1
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
68.0
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
66.9
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
66.8
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
66.5
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
65.7
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
64.4
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
64.0
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
63.4
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
63.2
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
62.5
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
61.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
61.4
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
61.3
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
61.1
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
59.8
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
59.6
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
59.5
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
59.4
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
58.7
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
58.6
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
58.2
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
57.8
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
57.7
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
56.2
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
55.9
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
55.9
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
55.7
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
55.7
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
55.7
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
55.5
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
55.4
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
55.3
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
55.1
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
54.9
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
54.5
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
54.3
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
53.4
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
53.2
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
52.9
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
52.6
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
52.1
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
52.1
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
51.6
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
51.1
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
50.6
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
50.4
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
50.4
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
50.3
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
50.2
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
49.9
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
49.1
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
49.0
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
48.6
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
48.5
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
48.4
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
47.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
47.4
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
46.8
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
46.6
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
46.0
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
45.7
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
45.5
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
45.2
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
45.0
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
44.7
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
44.7
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
44.2
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
43.8
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
43.1
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
43.0
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
42.9
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
42.2
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
41.9
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
41.8
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
41.3
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
41.2
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
41.1
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
41.1
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
40.8
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
40.2
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
40.0
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
39.3
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
38.8
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
38.7
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
38.7
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
38.1
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
37.5
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
37.2
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
37.2
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
37.1
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
36.9
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
36.6
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
36.0
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
35.4
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
34.7
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
34.4
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
34.0
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
33.9
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
32.7
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
32.4
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
32.3
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
32.2
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
32.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
31.8
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
30.9
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
30.8
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
30.8
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
30.5
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
30.2
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
30.1
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
29.2
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
28.8
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
28.7
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
28.6
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
28.2
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
28.0
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
27.9
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
27.7
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
27.5
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
27.4
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
27.1
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
26.4
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
26.3
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
25.9
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
25.9
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
25.7
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
25.1
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
24.7
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
24.3
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
23.2
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
21.5
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
21.3
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
21.2
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
21.2
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
21.1
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
20.8
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
20.8
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
20.3
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
19.8
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
19.7
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
19.4
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
18.9
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
4.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
38.3
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 29.0
Samples: 4
Max nTPM: 34.8
Min nTPM: 21.0
Sample A
Male
34.8
Sample B
Male
32.6
Sample C
Female
27.4
Sample D
Female
21.0
Hippocampal formation nTPM: 38.3
Samples: 4
Max nTPM: 45.2
Min nTPM: 34.5
Sample A
Male
34.5
Sample B
Male
38.1
Sample C
Female
45.2
Sample D
Female
35.3
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.