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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
46.2
Sample id
Sample description
nTPM
Amygdala nTPM: 40.5
2814
Male, age 76, right hemisphere
52.0
2514
Male, age 75, right hemisphere
43.1
2695
Female, age 67, right hemisphere
40.1
2517
Female, age 94, left hemisphere
34.9
1987
Female, age 91, left hemisphere
32.5
Basal amygdala nTPM: 34.8
2827
Female, age 67, right hemisphere
42.1
2110
Male, age 80, left hemisphere
38.6
1955
Male, age 76, both hemispheres
36.9
2685
Female, age 94, left hemisphere
35.8
2609
Male, age 75, right hemisphere
34.6
2243
Female, age 91, right hemisphere
21.0
Central amygdala nTPM: 37.2
1905
Male, age 76, both hemispheres
47.1
2239
Male, age 80, left hemisphere
37.9
2515
Male, age 75, right hemisphere
34.1
2701
Female, age 91, right hemisphere
33.8
2826
Female, age 94, left hemisphere
33.0
Corticomedial amygdala nTPM: 28.4
2428
Male, age 75, right hemisphere
33.4
2429
Female, age 94, left hemisphere
32.4
2535
Female, age 67, right hemisphere
31.7
2240
Male, age 76, both hemispheres
28.4
2829
Male, age 80, left hemisphere
26.2
2242
Female, age 91, right hemisphere
18.1
Lateral amygdala nTPM: 46.2
2830
Female, age 67, right hemisphere
52.6
2516
Male, age 75, right hemisphere
49.4
1883
Male, age 76, both hemispheres
49.1
2256
Male, age 80, left hemisphere
46.6
2534
Female, age 94, left hemisphere
43.6
2255
Female, age 91, right hemisphere
35.8
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
35.1
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 35.1
Samples: 152
Max nTPM: 99.9
Min nTPM: 2.3
Std nTPM: 16.7
Median nTPM: 31.6
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
99.9
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
89.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
88.9
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
84.4
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
80.3
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
74.6
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
68.1
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
64.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
64.5
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
63.2
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
61.2
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
59.9
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
59.6
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
57.6
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
55.3
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
55.1
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
54.5
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
54.4
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
51.8
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
51.8
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
51.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
51.6
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
50.5
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
49.8
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
49.0
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
48.3
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
48.1
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
47.7
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
47.7
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
47.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
46.9
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
46.5
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
46.1
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
44.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
44.8
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
44.1
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
44.0
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
43.7
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
43.7
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
43.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
41.9
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
41.7
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
41.6
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
41.4
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
41.2
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
41.1
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
41.0
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
40.9
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
40.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
40.2
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
39.8
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
39.6
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
39.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
38.2
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
37.9
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
37.6
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
37.2
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
36.9
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
36.8
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
36.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
36.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
36.4
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
35.8
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
35.8
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
35.4
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
35.4
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
34.4
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
34.3
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
34.0
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
33.6
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
33.5
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
33.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
32.5
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
32.0
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
31.7
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
31.6
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
31.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
31.5
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
31.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
30.7
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
30.5
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
30.1
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
29.4
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
29.0
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
28.9
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
28.8
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
28.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
28.5
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
28.5
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
28.4
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
28.4
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
28.3
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
28.3
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
28.1
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
27.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
27.3
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
27.2
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
26.8
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
26.6
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
26.5
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
26.3
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
25.9
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
25.8
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
25.8
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
25.7
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
25.7
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
25.5
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
25.5
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
25.3
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
25.2
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
24.9
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
24.7
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
24.1
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
23.8
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
23.7
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
23.4
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
23.4
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
22.9
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
22.4
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
22.1
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
21.9
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
21.8
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
21.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
21.6
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
21.6
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
21.5
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
21.3
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
21.3
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
21.0
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
20.8
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
20.8
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
20.8
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
20.4
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
20.0
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
18.7
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
18.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
18.0
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
16.6
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
16.2
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
16.0
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
15.9
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
14.3
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
14.2
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
14.1
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
14.0
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
11.8
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
11.2
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
10.6
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
9.4
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
7.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
5.2
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
2.3
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
26.0
Mouse sample
Sample description
nTPM
Amygdala nTPM: 26.0
Samples: 4
Max nTPM: 36.6
Min nTPM: 21.9
Sample A
Male
21.9
Sample B
Male
22.5
Sample C
Female
36.6
Sample D
Female
23.1
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.