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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
297.3
nTPM
Monaco:
121.4
nTPM
Schmiedel:
321.4
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
297.3
HPA sample
nTPM
gdT-cell nTPM: 183.3
Samples: 6
Max nTPM: 247.2
Min nTPM: 143.0
P10809_1007
181.3
P10809_1022
193.5
P10809_1041
247.2
P10809_1060
145.6
P10809_1077
143.0
P10809_1098
189.0
MAIT T-cell nTPM: 232.6
Samples: 6
Max nTPM: 272.4
Min nTPM: 179.1
P10809_1006
191.2
P10809_1024
264.9
P10809_1043
271.9
P10809_1062
216.1
P10809_1083
179.1
P10809_1097
272.4
Memory CD4 T-cell nTPM: 222.9
Samples: 6
Max nTPM: 267.1
Min nTPM: 155.4
P10809_1014
219.6
P10809_1026
256.8
P10809_1045
267.1
P10809_1064
208.8
P10809_1086
155.4
P10809_1113
229.9
Memory CD8 T-cell nTPM: 213.2
Samples: 5
Max nTPM: 241.7
Min nTPM: 193.1
P10809_1012
195.1
P10809_1027
228.1
P10809_1046
241.7
P10809_1065
193.1
P10809_1111
208.1
Naive CD4 T-cell nTPM: 229.7
Samples: 6
Max nTPM: 298.6
Min nTPM: 163.0
P10809_1015
207.8
P10809_1030
260.7
P10809_1049
298.6
P10809_1068
222.0
P10809_1085
163.0
P10809_1112
226.2
Naive CD8 T-cell nTPM: 204.7
Samples: 6
Max nTPM: 235.8
Min nTPM: 128.9
P10809_1016
235.8
P10809_1031
235.5
P10809_1050
234.3
P10809_1069
196.2
P10809_1087
128.9
P10809_1110
197.4
T-reg nTPM: 297.3
Samples: 6
Max nTPM: 365.3
Min nTPM: 237.6
P10809_1018
237.6
P10809_1037
313.3
P10809_1056
365.3
P10809_1075
299.1
P10809_1094
269.7
P10809_1106
299.0
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
121.4
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 90.4
Samples: 4
Max nTPM: 135.7
Min nTPM: 59.0
RHH5202_R3573
59.0
RHH5230_R3602
71.4
RHH5259_R3631
95.4
RHH5288_R3660
135.7
Effector memory CD8 T-cell nTPM: 59.0
Samples: 4
Max nTPM: 77.5
Min nTPM: 44.3
RHH5203_R3574
63.5
RHH5231_R3603
50.7
RHH5260_R3632
77.5
RHH5289_R3661
44.3
MAIT T-cell nTPM: 91.5
Samples: 4
Max nTPM: 116.7
Min nTPM: 70.7
RHH5233_R3605
85.3
RHH5205_R3576
70.7
RHH5262_R3634
93.1
RHH5297_R3663
116.7
Memory CD4 T-cell TFH nTPM: 93.2
Samples: 4
Max nTPM: 112.9
Min nTPM: 65.9
RHH5300_R3666
99.9
RHH5236_R3608
112.9
RHH5265_R3637
65.9
RHH5208_R3579
94.2
Memory CD4 T-cell Th1 nTPM: 115.2
Samples: 4
Max nTPM: 187.9
Min nTPM: 62.6
RHH5210_R3581
62.6
RHH5302_R3668
187.9
RHH5238_R3610
118.7
RHH5267_R3639
91.7
Memory CD4 T-cell Th1/Th17 nTPM: 98.0
Samples: 4
Max nTPM: 125.9
Min nTPM: 66.7
RHH5303_R3669
125.9
RHH5211_R3582
101.1
RHH5239_R3611
66.7
RHH5268_R3640
98.3
Memory CD4 T-cell Th17 nTPM: 80.7
Samples: 4
Max nTPM: 92.9
Min nTPM: 68.6
RHH5304_R3670
92.9
RHH5212_R3583
83.6
RHH5240_R3612
68.6
RHH5269_R3641
77.6
Memory CD4 T-cell Th2 nTPM: 95.6
Samples: 4
Max nTPM: 118.8
Min nTPM: 71.5
RHH5305_R3671
118.8
RHH5213_R3584
71.5
RHH5241_R3613
114.9
RHH5270_R3642
77.0
Naive CD4 T-cell nTPM: 94.2
Samples: 4
Max nTPM: 128.0
Min nTPM: 69.6
RHH5306_R3672
105.1
RHH5214_R3585
128.0
RHH5242_R3614
69.6
RHH5271_R3643
74.1
Naive CD8 T-cell nTPM: 84.9
Samples: 4
Max nTPM: 99.2
Min nTPM: 57.9
RHH5201_R3572
57.9
RHH5229_R3601
90.2
RHH5258_R3630
99.2
RHH5287_R3659
92.2
Non-Vd2 gdTCR nTPM: 88.8
Samples: 4
Max nTPM: 135.9
Min nTPM: 64.2
RHH5235_R3607
75.6
RHH5264_R3636
79.5
RHH5207_R3578
64.2
RHH5299_R3665
135.9
T-reg nTPM: 103.3
Samples: 4
Max nTPM: 165.7
Min nTPM: 79.9
RHH5301_R3667
165.7
RHH5237_R3609
86.0
RHH5266_R3638
79.9
RHH5209_R3580
81.6
Terminal effector memory CD4 T-cell nTPM: 67.4
Samples: 2
Max nTPM: 76.2
Min nTPM: 58.5
RHH5243_R3615
58.5
RHH5272_R3644
76.2
Terminal effector memory CD8 T-cell nTPM: 116.7
Samples: 4
Max nTPM: 219.4
Min nTPM: 69.6
RHH5232_R3604
69.6
RHH5204_R3575
219.4
RHH5261_R3633
85.7
RHH5296_R3662
92.1
Vd2 gdTCR nTPM: 121.4
Samples: 4
Max nTPM: 181.2
Min nTPM: 69.4
RHH5234_R3606
70.1
RHH5206_R3577
164.8
RHH5263_R3635
69.4
RHH5298_R3664
181.2
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
