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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PLEC is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
182.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
93.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
84.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
83.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
76.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
73.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
66.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
66.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
64.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
60.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
57.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
57.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
57.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
54.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
53.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
51.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
48.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
46.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
45.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
44.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
44.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
43.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
42.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
42.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
42.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
42.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
40.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
38.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
38.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
37.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
37.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
36.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
36.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
35.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
35.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
35.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
35.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
34.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
34.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
34.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
34.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
34.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
33.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
33.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
33.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
33.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
33.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
33.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
32.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
32.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
32.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
32.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
32.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
32.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
32.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
31.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
31.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
31.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
31.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
31.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
31.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
30.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
30.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
30.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
30.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
30.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
30.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
30.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
29.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
29.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
29.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
29.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
29.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
29.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
28.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
28.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
28.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
28.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
28.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
28.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
28.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
28.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
28.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
27.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
27.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
27.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
27.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
27.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
27.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
27.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
27.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
26.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
26.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
26.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
26.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
26.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
26.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
26.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
26.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
25.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
25.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
25.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
25.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
25.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
25.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
25.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
24.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
24.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
24.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
24.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
24.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
24.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
24.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
24.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
24.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
24.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
23.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
23.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
23.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
23.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
23.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
23.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
23.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
23.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
22.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
22.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
22.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
22.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
22.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
22.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
22.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
22.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
21.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
21.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
21.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
21.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
21.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
21.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
21.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
21.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
21.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
21.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
21.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
20.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
20.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
20.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
20.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
20.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
20.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
20.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
20.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
20.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
20.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
20.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
20.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
20.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
19.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
19.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
19.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
19.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
19.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
19.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
19.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
19.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
19.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
19.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
19.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
19.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
19.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
19.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
19.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
19.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
19.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
18.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
18.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
18.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
18.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
18.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
18.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
18.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
18.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
18.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
18.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
18.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
18.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
18.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
17.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
17.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
17.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
17.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
17.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
17.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
17.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
17.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
17.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
17.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
17.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
16.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
16.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
16.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
16.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
16.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
16.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
16.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
16.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
16.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
16.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
16.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
16.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
16.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
16.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
16.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
16.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
15.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
15.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
15.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
15.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
15.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
15.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
15.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
15.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
15.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
15.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
15.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
14.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
14.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
14.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
14.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
13.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
13.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
13.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
13.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
13.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
13.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
13.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
13.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
13.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
13.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
13.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
12.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
12.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
12.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
12.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
12.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
12.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
11.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
11.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
10.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
10.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
10.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PLEC is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.8
Number of samples
231
Samples
Sample
Description
TPM
DO45279
0 years, male, NA, stage:3, alive, 1290 days
291.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
232.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
123.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
73.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
64.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
54.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
50.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
49.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
49.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
48.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
48.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
46.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
45.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
45.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
45.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
44.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
43.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
43.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
43.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
41.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
41.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
41.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
39.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
37.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
37.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
37.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
36.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
36.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
36.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
36.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
35.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
35.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
35.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
34.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
33.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
32.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
31.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
31.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
31.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
30.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
29.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
29.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
29.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
29.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
29.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
28.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
28.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
27.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
27.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
27.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
27.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
26.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
26.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
26.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
26.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
26.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
25.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
25.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
25.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
24.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
24.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
24.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
24.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
24.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
23.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
23.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
23.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
23.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
23.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
23.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
23.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
23.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
23.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
22.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
22.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
22.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
21.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
21.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
21.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
21.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
21.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
21.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
21.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
21.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
20.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
20.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
20.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
20.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
20.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
20.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
20.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
20.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
19.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
19.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
19.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
19.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
18.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
18.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
18.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
18.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
18.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
18.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
18.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
18.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
18.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
18.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
18.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
18.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
17.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
17.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
17.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
17.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
17.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
16.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
15.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
15.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
15.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
15.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
15.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
14.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
14.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
13.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
13.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
12.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
8.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
2.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
925
Tumor
1.5
533
Tumor
1.0
685
Tumor
1.0
267
Tumor
0.9
513
Tumor
0.8
917
Tumor
0.8
641
Tumor
0.8
311
Tumor
0.6
483
Tumor
0.5
367
Tumor
0.5
421
Tumor
0.4
231
Tumor
0.4
937
Tumor
0.4
257
Tumor
0.4
873
Tumor
0.4
868
Normal
0.4
147
Tumor
0.4
427
Tumor
0.4
745
Tumor
0.4
283
Tumor
0.3
185
Tumor
0.3
1015
Tumor
0.3
627
Tumor
0.3
375
Tumor
0.3
755
Tumor
0.3
465
Tumor
0.3
444
Normal
0.3
461
Tumor
0.3
982
Normal
0.3
477
Tumor
0.3
297
Tumor
0.3
395
Tumor
0.3
141
Tumor
0.3
161
Tumor
0.3
492
Normal
0.3
211
Tumor
0.3
557
Tumor
0.3
823
Tumor
0.3
537
Tumor
0.3
526
Normal
0.3
786
Normal
0.3
824
Normal
0.3
975
Tumor
0.3
428
Normal
0.3
443
Tumor
0.3
528
Normal
0.3
563
Tumor
0.3
911
Tumor
0.3
913
Tumor
0.3
1032
Normal
0.2
867
Tumor
0.2
423
Tumor
0.2
1045
Tumor
0.2
817
Tumor
0.2
916
Normal
0.2
884
Normal
0.2
455
Tumor
0.2
365
Tumor
0.2
435
Tumor
0.2
192
Normal
0.2
462
Normal
0.2
636
Normal
0.2
958
Normal
0.2
635
Tumor
0.2
416
Normal
0.2
697
Tumor
0.2
874
Normal
0.2
327
Tumor
0.2
951
Tumor
0.2
212
Normal
0.2
536
Normal
0.2
981
Tumor
0.2
223
Tumor
0.2
466
Normal
0.2
478
Normal
0.2
482
Normal
0.2
984
Normal
0.2
224
Normal
0.2
866
Normal
0.2
268
Normal
0.2
534
Normal
0.2
616
Normal
0.2
558
Normal
0.1
686
Normal
0.1
448
Normal
0.1
881
Tumor
0.1
924
Normal
0.1
314
Normal
0.1
474
Normal
0.1
756
Normal
0.1
312
Normal
0.1
535
Tumor
0.1
1027
Tumor
0.1
883
Tumor
0.1
956
Normal
0.1
716
Normal
0.1
383
Tumor
0.1
546
Normal
0.1
136
Normal
0.1
218
Normal
0.1
355
Tumor
0.1
484
Normal
0.1
514
Normal
0.1
188
Normal
0.1
162
Normal
0.1
863
Tumor
0.1
353
Tumor
0.1
515
Tumor
0.1
523
Tumor
0.1
964
Normal
0.1
516
Normal
0.1
424
Normal
0.1
944
Normal
0.1
138
Normal
0.1
171
Tumor
0.1
472
Normal
0.1
328
Normal
0.1
955
Tumor
0.1
386
Normal
0.1
313
Tumor
0.1
436
Normal
0.1
172
Normal
0.1
414
Normal
0.1
926
Normal
0.1
664
Normal
0.1
918
Normal
0.1
864
Normal
0.1
538
Normal
0.1
146
Normal
0.1
362
Normal
0.1
364
Normal
0.1
191
Tumor
0.1
728
Normal
0.1
187
Tumor
0.1
1022
Normal
0.1
387
Tumor
0.1
426
Normal
0.1
1028
Normal
0.1
494
Normal
0.1
272
Normal
0.1
628
Normal
0.1
857
Tumor
0.1
878
Normal
0.1
715
Tumor
0.1
278
Normal
0.1
415
Tumor
0.1
963
Tumor
0.1
746
Normal
0.1
148
Normal
0.1
394
Normal
0.1
564
Normal
0.1
976
Normal
0.1
412
Normal
0.1
1046
Normal
0.1
471
Tumor
0.1
361
Tumor
0.0
464
Normal
0.0
258
Normal
0.0
952
Normal
0.0
618
Normal
0.0
518
Normal
0.0
284
Normal
0.0
714
Normal
0.0
554
Normal
0.0
954
Normal
0.0
481
Tumor
0.0
978
Normal
0.0
356
Normal
0.0
344
Normal
0.0
388
Normal
0.0
128
Normal
0.0
723
Tumor
0.0
1014
Normal
0.0
524
Normal
0.0
132
Normal
0.0
126
Normal
0.0
572
Normal
0.0
1042
Normal
0.0
451
Tumor
0.0
145
Tumor
0.0
816
Normal
0.0
738
Normal
0.0
722
Normal
0.0
468
Normal
0.0
914
Normal
0.0
358
Normal
0.0
778
Normal
0.0
385
Tumor
0.0
366
Normal
0.0
392
Normal
0.0
721
Tumor
0.0
568
Normal
0.0
938
Normal
0.0
396
Normal
0.0
912
Normal
0.0
915
Tumor
0.0
966
Normal
0.0
368
Normal
0.0
222
Normal
0.0
642
Normal
0.0
232
Normal
0.0
968
Normal
0.0
452
Normal
0.0
228
Normal
0.0
186
Normal
0.0
663
Tumor
0.0
137
Tumor
0.0
447
Tumor
0.0
473
Tumor
0.0
574
Normal
0.0
862
Normal
0.0
286
Normal
0.0
525
Tumor
0.0
422
Normal
0.0
662
Normal
0.0
922
Normal
0.0
298
Normal
0.0
446
Normal
0.0
488
Normal
0.0
332
Normal
0.0
742
Normal
0.0
777
Tumor
0.0
384
Normal
0.0
648
Normal
0.0
696
Normal
-0.1
737
Tumor
-0.1
493
Tumor
-0.1
432
Normal
-0.1
882
Normal
-0.1
352
Normal
-0.1
456
Normal
-0.1
214
Normal
-0.1
1044
Normal
-0.1
262
Normal
-0.1
617
Tumor
-0.1
127
Tumor
-0.1
698
Normal
-0.1
498
Normal
-0.1
977
Tumor
-0.1
196
Normal
-0.1
852
Normal
-0.1
376
Normal
-0.1
111
Normal
-0.1
125
Tumor
-0.1
967
Tumor
-0.1
114
Normal
-0.1
142
Normal
-0.1
354
Normal
-0.1
818
Normal
-0.1
1026
Normal
-0.1
434
Normal
-0.1
545
Tumor
-0.1
195
Tumor
-0.1
363
Tumor
-0.1
124
Normal
-0.1
923
Tumor
-0.2
123
Tumor
-0.2
213
Tumor
-0.2
135
Tumor
-0.2
861
Tumor
-0.2
343
Tumor
-0.2
221
Tumor
-0.2
433
Tumor
-0.2
445
Tumor
-0.2
331
Tumor
-0.2
858
Normal
-0.2
943
Tumor
-0.2
1016
Normal
-0.2
567
Tumor
-0.2
713
Tumor
-0.2
553
Tumor
-0.2
342
Normal
-0.2
865
Tumor
-0.2
744
Normal
-0.2
743
Tumor
-0.2
491
Tumor
-0.2
271
Tumor
-0.2
785
Tumor
-0.2
672
Normal
-0.2
666
Normal
-0.3
814
Normal
-0.3
487
Tumor
-0.3
571
Tumor
-0.3
413
Tumor
-0.3
615
Tumor
-0.3
217
Tumor
-0.3
277
Tumor
-0.3
227
Tumor
-0.3
431
Tumor
-0.3
1031
Tumor
-0.3
813
Tumor
-0.3
261
Tumor
-0.4
393
Tumor
-0.4
1013
Tumor
-0.4
741
Tumor
-0.4
573
Tumor
-0.4
921
Tumor
-0.4
497
Tumor
-0.4
467
Tumor
-0.4
953
Tumor
-0.4
671
Tumor
-0.4
341
Tumor
-0.4
527
Tumor
-0.4
965
Tumor
-0.5
647
Tumor
-0.5
957
Tumor
-0.5
113
Tumor
-0.5
112
Tumor
-0.5
1025
Tumor
-0.5
1041
Tumor
-0.5
357
Tumor
-0.5
1021
Tumor
-0.5
983
Tumor
-0.6
517
Tumor
-0.6
1043
Tumor
-0.6
877
Tumor
-0.6
131
Tumor
-0.6
463
Tumor
-0.6
411
Tumor
-0.7
727
Tumor
-0.7
665
Tumor
-0.7
425
Tumor
-0.8
661
Tumor
-0.8
851
Tumor
-0.8
695
Tumor
-0.9
391
Tumor
-1.0
724
Normal
-1.1
815
Tumor
-1.1
351
Tumor
-1.3
285
Tumor
-1.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
