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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
21.5
nTPM
HPA Brain:
67.2
nTPM
GTEx:
21.5
nTPM
FANTOM5:
23.6
Scaled Tags Per Million
Pig:
36.5
nTPM
Mouse:
46.6
nTPM
Allen mouse:
2.3
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
67.2
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 57.9
2586
Male, age 75, left hemisphere
96.3
2019
Male, age 18, unknown
68.5
2666
Male, age 74, left hemisphere
59.2
2828
Female, age 72, unknown
55.0
1827
Male, age 72, unknown
54.9
2411
Female, age 72, unknown
54.7
1830
Male, age 51, unknown
48.5
1833
Male, age 53, unknown
47.4
1870
Female, age 42, unknown
47.4
2219
Male, age 76, both hemispheres
46.9
Dorsal raphe nucleus nTPM: 58.9
2047
Male, age 72, unknown
63.2
2016
Female, age 72, unknown
60.1
2750
Male, age 76, both hemispheres
58.6
1828
Male, age 53, unknown
58.1
2298
Female, age 72, unknown
54.3
Inferior colliculus nTPM: 55.2
1890
Male, age 53, unknown
62.5
2097
Female, age 72, unknown
60.8
1848
Female, age 42, unknown
51.0
2849
Male, age 72, unknown
46.7
Median raphe nucleus nTPM: 48.2
2220
Male, age 76, midline
48.2
Periaquaductal grey, anterior nTPM: 64.1
1947
Male, age 18, unknown
68.0
2502
Female, age 75, unknown
66.3
1795
Male, age 51, unknown
58.1
Periaquaductal grey, dorsal nTPM: 49.4
1840
Male, age 53, unknown
55.5
2464
Female, age 72, unknown
50.0
2850
Male, age 76, both hemispheres
47.7
1831
Male, age 72, unknown
44.5
Periaquaductal grey, lateral nTPM: 45.4
2140
Male, age 76, both hemispheres
48.3
2272
Male, age 74, both hemispheres
45.5
2053
Male, age 18, unknown
42.4
Pretectal area nTPM: 58.2
2007
Male, age 72, unknown
81.2
1817
Female, age 42, unknown
70.9
1816
Male, age 51, unknown
70.1
1944
Female, age 72, unknown
69.0
1815
Male, age 53, unknown
61.2
2407
Male, age 75, both hemispheres
51.1
2667
Female, age 75, unknown
50.6
2273
Male, age 74, both hemispheres
47.1
2224
Female, age 72, unknown
46.7
2316
Male, age 76, right hemisphere
46.6
2825
Male, age 18, unknown
45.6
Red nucleus nTPM: 52.3
2785
Male, age 18, unknown
66.0
2584
Male, age 75, left hemisphere
65.4
2769
Male, age 72, unknown
52.7
2503
Female, age 72, unknown
52.5
1821
Female, age 72, unknown
51.3
2588
Male, age 74, left hemisphere
50.9
2227
Male, age 72, unknown
50.6
1904
Male, age 53, unknown
50.4
2725
Female, age 75, unknown
49.4
1954
Female, age 42, unknown
48.8
1865
Male, age 51, unknown
46.2
2823
Male, age 76, right hemisphere
43.9
Substantia nigra nTPM: 67.2
1916
Female, age 42, unknown
89.7
2241
Male, age 72, unknown
72.8
1851
Male, age 51, unknown
72.2
1889
Female, age 72, unknown
69.4
1941
Male, age 53, unknown
68.9
2665
Male, age 74, both hemispheres
68.1
2583
Male, age 75, right hemisphere
63.5
2590
Female, age 75, unknown
57.0
2409
Female, age 72, unknown
55.8
2699
Male, age 18, unknown
54.3
Superior colliculus nTPM: 53.8
2668
Female, age 75, unknown
71.0
2664
Male, age 75, both hemispheres
65.3
1839
Male, age 51, unknown
53.8
2087
Female, age 72, unknown
53.8
1796
Male, age 53, unknown
53.2
2261
Male, age 18, unknown
53.1
1895
Male, age 76, right hemisphere
52.8
2587
Male, age 74, left hemisphere
47.6
1913
Female, age 42, unknown
44.2
1995
Male, age 72, unknown
42.9
Ventral tegmental area nTPM: 56.8
2410
Female, age 72, unknown
69.9
1915
Female, age 42, unknown
66.5
1942
Male, age 51, unknown
59.8
2218
Male, age 76, both hemispheres
52.2
2021
Male, age 53, unknown
48.8
2223
Female, age 72, unknown
43.5
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
21.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 21.5
Samples: 139
Max nTPM: 45.1
Min nTPM: 9.8
Std nTPM: 6.7
Median nTPM: 20.5
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
45.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
42.2
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
39.4
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
35.5
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
35.4
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
34.8
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
33.9
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
33.8
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
33.4
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
32.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
32.1
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
32.0
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
31.9
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
31.5
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
31.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
31.3
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
31.2
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
30.8
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
30.3
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
30.0
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
29.6
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
28.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
28.5
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
28.4
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
28.0
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
27.7
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
27.2
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
26.1
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
25.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
25.8
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
25.5
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
25.4
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
25.3
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
24.7
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
24.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
24.4
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
24.2
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
24.1
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
24.1
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
23.8
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
23.8
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
23.7
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
23.4
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
23.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
23.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
23.1
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
23.1
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
23.0
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
22.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
22.7
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
22.6
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
22.6
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
22.4
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
22.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
22.2
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
22.2
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
21.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
21.5
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
21.5
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
21.3
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
21.1
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
21.0
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
21.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
20.9
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
20.6
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
20.6
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
20.5
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
20.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
20.5
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
20.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
20.4
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
20.1
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
19.9
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
19.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
19.8
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
19.6
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
19.4
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
19.3
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
19.3
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
18.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
18.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
18.8
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
18.6
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
18.5
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
18.4
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
18.2
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
18.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
18.2
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
18.1
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
18.1
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
18.0
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
18.0
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
18.0
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
18.0
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
17.9
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
17.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
17.8
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
17.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
17.5
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
17.4
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
17.3
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
16.9
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
16.9
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
16.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
16.6
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
16.6
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
16.6
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
16.5
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
16.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
16.3
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
16.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
16.1
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
16.1
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
15.9
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
15.8
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
15.6
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
15.3
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
14.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
14.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
14.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
14.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
14.3
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
14.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
14.1
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
14.0
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
14.0
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
14.0
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
14.0
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
13.5
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
13.2
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
12.7
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
12.6
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
11.4
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
11.4
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
11.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
11.0
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
10.8
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
10.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
9.8
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
46.6
Mouse sample
Sample description
nTPM
Midbrain nTPM: 46.7
Samples: 4
Max nTPM: 48.2
Min nTPM: 44.6
Sample A
Male
48.2
Sample B
Male
47.7
Sample C
Female
44.6
Sample D
Female
46.1
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.