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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
67.0
nTPM
HPA Brain:
282.0
nTPM
GTEx:
67.0
nTPM
FANTOM5:
536.0
Scaled Tags Per Million
Pig:
257.8
nTPM
Mouse:
145.5
nTPM
Allen mouse:
2.4
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
282.0
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 217.0
2411
Female, age 72, unknown
304.2
1830
Male, age 51, unknown
292.6
1833
Male, age 53, unknown
271.7
2019
Male, age 18, unknown
270.2
1870
Female, age 42, unknown
268.4
2219
Male, age 76, both hemispheres
220.0
2828
Female, age 72, unknown
196.0
1827
Male, age 72, unknown
140.7
2666
Male, age 74, left hemisphere
123.1
2586
Male, age 75, left hemisphere
83.1
Dorsal raphe nucleus nTPM: 167.5
2750
Male, age 76, both hemispheres
333.9
2016
Female, age 72, unknown
167.1
1828
Male, age 53, unknown
155.3
2047
Male, age 72, unknown
98.9
2298
Female, age 72, unknown
82.5
Inferior colliculus nTPM: 140.5
1848
Female, age 42, unknown
150.4
1890
Male, age 53, unknown
149.9
2849
Male, age 72, unknown
135.1
2097
Female, age 72, unknown
126.7
Median raphe nucleus nTPM: 163.7
2220
Male, age 76, midline
163.7
Periaquaductal grey, anterior nTPM: 108.5
1947
Male, age 18, unknown
118.7
2502
Female, age 75, unknown
116.9
1795
Male, age 51, unknown
89.7
Periaquaductal grey, dorsal nTPM: 94.4
2464
Female, age 72, unknown
160.7
1831
Male, age 72, unknown
102.7
2850
Male, age 76, both hemispheres
63.7
1840
Male, age 53, unknown
50.7
Periaquaductal grey, lateral nTPM: 115.6
2272
Male, age 74, both hemispheres
155.6
2053
Male, age 18, unknown
123.5
2140
Male, age 76, both hemispheres
67.7
Pretectal area nTPM: 129.3
2316
Male, age 76, right hemisphere
193.4
1815
Male, age 53, unknown
176.3
2273
Male, age 74, both hemispheres
154.0
1817
Female, age 42, unknown
141.6
2407
Male, age 75, both hemispheres
137.5
2007
Male, age 72, unknown
136.9
2825
Male, age 18, unknown
129.1
2224
Female, age 72, unknown
108.1
2667
Female, age 75, unknown
84.7
1944
Female, age 72, unknown
83.7
1816
Male, age 51, unknown
77.4
Red nucleus nTPM: 282.0
1865
Male, age 51, unknown
352.4
1821
Female, age 72, unknown
349.1
1904
Male, age 53, unknown
336.9
2823
Male, age 76, right hemisphere
328.1
2227
Male, age 72, unknown
306.5
2769
Male, age 72, unknown
299.5
2785
Male, age 18, unknown
294.1
2503
Female, age 72, unknown
279.2
1954
Female, age 42, unknown
276.3
2725
Female, age 75, unknown
219.5
2588
Male, age 74, left hemisphere
195.8
2584
Male, age 75, left hemisphere
146.4
Substantia nigra nTPM: 144.2
2590
Female, age 75, unknown
182.0
1889
Female, age 72, unknown
177.5
2583
Male, age 75, right hemisphere
164.1
2409
Female, age 72, unknown
160.4
1851
Male, age 51, unknown
160.2
1941
Male, age 53, unknown
145.7
2699
Male, age 18, unknown
129.0
2241
Male, age 72, unknown
125.1
1916
Female, age 42, unknown
116.5
2665
Male, age 74, both hemispheres
82.0
Superior colliculus nTPM: 172.0
1913
Female, age 42, unknown
276.4
1995
Male, age 72, unknown
241.4
1895
Male, age 76, right hemisphere
230.6
2587
Male, age 74, left hemisphere
207.4
2668
Female, age 75, unknown
203.9
1839
Male, age 51, unknown
173.5
1796
Male, age 53, unknown
127.1
2087
Female, age 72, unknown
103.5
2261
Male, age 18, unknown
91.3
2664
Male, age 75, both hemispheres
65.1
Ventral tegmental area nTPM: 207.0
2223
Female, age 72, unknown
353.1
2410
Female, age 72, unknown
251.3
2218
Male, age 76, both hemispheres
197.7
1942
Male, age 51, unknown
158.5
2021
Male, age 53, unknown
147.5
1915
Female, age 42, unknown
134.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
67.0
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 67.0
Samples: 139
Max nTPM: 335.0
Min nTPM: 4.8
Std nTPM: 48.7
Median nTPM: 54.0
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
335.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
227.3
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
224.9
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
213.1
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
208.1
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
204.2
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
177.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
141.1
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
136.7
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
135.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
133.7
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
132.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
129.1
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
127.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
124.7
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
120.6
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
118.4
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
116.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
110.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
108.4
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
108.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
99.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
97.0
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
96.1
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
93.5
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
92.4
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
90.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
89.2
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
89.1
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
86.7
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
86.0
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
85.1
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
84.9
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
83.6
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
82.7
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
80.5
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
77.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
76.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
76.3
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
75.9
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
75.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
75.0
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
72.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
71.4
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
69.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
69.0
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
69.0
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
68.7
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
67.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
66.9
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
65.6
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
64.7
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
64.0
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
63.7
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
63.0
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
62.1
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
61.5
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
61.0
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
60.1
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
59.9
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
59.4
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
57.8
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
57.1
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
56.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
56.8
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
56.4
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
56.1
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
54.8
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
54.7
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
54.0
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
53.5
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
53.1
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
51.6
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
51.3
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
50.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
49.7
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
49.5
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
49.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
49.0
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
48.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
47.9
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
47.3
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
46.5
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
46.2
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
45.9
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
45.5
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
44.5
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
44.1
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
44.0
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
44.0
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
43.5
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
42.7
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
42.7
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
42.5
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
42.4
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
41.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
40.9
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
40.9
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
40.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
40.1
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
39.7
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
39.4
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
38.2
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
37.3
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
35.5
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
35.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
34.8
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
34.6
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
34.4
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
33.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
32.4
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
32.2
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
32.0
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
31.2
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
30.8
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
30.7
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
30.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
30.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
29.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
29.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
27.5
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
27.4
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
26.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
26.0
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
25.4
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
24.8
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
24.2
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
23.7
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
22.8
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
20.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
20.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
20.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
19.6
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
18.8
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
18.7
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
16.4
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
12.6
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
9.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
4.8
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
145.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 145.5
Samples: 4
Max nTPM: 171.7
Min nTPM: 117.1
Sample A
Male
117.1
Sample B
Male
129.1
Sample C
Female
163.9
Sample D
Female
171.7
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.