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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
3.3
nTPM
HPA Brain:
19.8
nTPM
GTEx:
3.3
nTPM
FANTOM5:
25.7
Scaled Tags Per Million
Pig:
9.5
nTPM
Mouse:
8.1
nTPM
Allen mouse:
0.0
Expression energy
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
19.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 15.6
2019
Male, age 18, unknown
25.0
2586
Male, age 75, left hemisphere
23.5
1827
Male, age 72, unknown
20.6
2828
Female, age 72, unknown
20.4
2666
Male, age 74, left hemisphere
14.1
1830
Male, age 51, unknown
11.5
2411
Female, age 72, unknown
11.3
2219
Male, age 76, both hemispheres
10.8
1833
Male, age 53, unknown
10.2
1870
Female, age 42, unknown
8.9
Dorsal raphe nucleus nTPM: 14.6
1828
Male, age 53, unknown
16.0
2750
Male, age 76, both hemispheres
15.3
2047
Male, age 72, unknown
14.6
2298
Female, age 72, unknown
14.4
2016
Female, age 72, unknown
12.8
Inferior colliculus nTPM: 11.0
2097
Female, age 72, unknown
12.8
1890
Male, age 53, unknown
12.3
2849
Male, age 72, unknown
10.3
1848
Female, age 42, unknown
8.8
Median raphe nucleus nTPM: 19.7
2220
Male, age 76, midline
19.7
Periaquaductal grey, anterior nTPM: 12.4
1795
Male, age 51, unknown
16.5
2502
Female, age 75, unknown
11.1
1947
Male, age 18, unknown
9.5
Periaquaductal grey, dorsal nTPM: 18.1
2850
Male, age 76, both hemispheres
28.2
1831
Male, age 72, unknown
19.6
2464
Female, age 72, unknown
12.8
1840
Male, age 53, unknown
11.9
Periaquaductal grey, lateral nTPM: 18.0
2140
Male, age 76, both hemispheres
22.2
2272
Male, age 74, both hemispheres
17.6
2053
Male, age 18, unknown
14.1
Pretectal area nTPM: 19.8
1816
Male, age 51, unknown
28.6
2007
Male, age 72, unknown
24.1
1817
Female, age 42, unknown
23.9
1944
Female, age 72, unknown
22.6
1815
Male, age 53, unknown
22.4
2273
Male, age 74, both hemispheres
22.2
2407
Male, age 75, both hemispheres
19.0
2316
Male, age 76, right hemisphere
16.1
2224
Female, age 72, unknown
15.9
2667
Female, age 75, unknown
13.3
2825
Male, age 18, unknown
10.1
Red nucleus nTPM: 12.3
2785
Male, age 18, unknown
20.1
2725
Female, age 75, unknown
15.7
2584
Male, age 75, left hemisphere
15.5
2503
Female, age 72, unknown
12.6
2823
Male, age 76, right hemisphere
11.8
1904
Male, age 53, unknown
10.8
2588
Male, age 74, left hemisphere
10.8
1954
Female, age 42, unknown
10.7
2769
Male, age 72, unknown
10.7
1865
Male, age 51, unknown
10.3
2227
Male, age 72, unknown
9.1
1821
Female, age 72, unknown
9.0
Substantia nigra nTPM: 12.4
1889
Female, age 72, unknown
15.7
2583
Male, age 75, right hemisphere
15.7
2409
Female, age 72, unknown
15.4
2590
Female, age 75, unknown
14.7
1941
Male, age 53, unknown
13.5
2665
Male, age 74, both hemispheres
12.5
1851
Male, age 51, unknown
9.8
2241
Male, age 72, unknown
9.2
1916
Female, age 42, unknown
8.8
2699
Male, age 18, unknown
8.5
Superior colliculus nTPM: 16.1
2261
Male, age 18, unknown
22.3
1796
Male, age 53, unknown
19.4
2664
Male, age 75, both hemispheres
18.5
1913
Female, age 42, unknown
18.4
2087
Female, age 72, unknown
18.1
2668
Female, age 75, unknown
15.2
1995
Male, age 72, unknown
15.1
1839
Male, age 51, unknown
13.2
2587
Male, age 74, left hemisphere
13.2
1895
Male, age 76, right hemisphere
7.7
Ventral tegmental area nTPM: 12.9
2218
Male, age 76, both hemispheres
17.1
2021
Male, age 53, unknown
14.5
1942
Male, age 51, unknown
13.3
2410
Female, age 72, unknown
11.8
2223
Female, age 72, unknown
11.1
1915
Female, age 42, unknown
9.9
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
3.3
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 3.3
Samples: 139
Max nTPM: 16.7
Min nTPM: 0.8
Std nTPM: 2.0
Median nTPM: 2.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
16.7
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
9.5
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
8.4
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
8.3
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
8.3
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
8.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
7.7
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
6.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
6.7
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
6.4
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
6.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
5.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
5.7
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
5.6
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
5.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
5.3
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
5.2
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
5.0
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
5.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
4.9
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
4.8
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
4.7
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
4.7
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
4.6
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
4.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
4.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
4.5
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
4.5
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
4.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
4.4
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
4.4
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
4.3
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
4.3
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
4.1
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
4.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
4.0
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
4.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
4.0
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
3.9
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
3.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
3.7
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
3.6
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
3.5
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
3.5
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
3.5
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
3.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
3.4
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
3.4
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
3.4
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
3.4
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
3.4
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
3.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
3.3
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
3.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
3.2
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
3.2
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
3.2
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
3.2
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
3.2
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
3.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
3.2
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
3.1
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
3.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
3.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
3.0
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
3.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
3.0
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
3.0
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
2.9
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
2.9
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
2.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
2.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
2.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
2.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
2.8
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
2.7
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
2.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
2.6
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
2.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
2.5
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
2.5
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
2.4
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
2.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
2.3
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
2.3
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
2.2
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
2.2
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
2.2
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
2.2
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
2.2
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
2.2
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
2.2
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
2.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
2.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
2.2
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
2.1
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
2.1
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
2.1
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
2.1
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
2.1
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
2.1
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
2.0
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
2.0
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
2.0
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
2.0
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
1.9
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
1.9
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
1.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
1.9
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
1.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
1.9
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
1.8
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
1.8
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
1.8
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
1.7
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
1.7
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
1.7
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
1.7
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
1.7
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
1.7
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
1.6
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
1.6
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
1.6
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
1.6
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
1.5
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
1.5
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
1.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
1.5
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
1.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
1.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
1.3
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
1.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
1.2
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
1.2
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
1.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
1.1
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
1.1
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
0.9
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
0.8
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
8.1
Mouse sample
Sample description
nTPM
Midbrain nTPM: 8.1
Samples: 4
Max nTPM: 8.8
Min nTPM: 6.4
Sample A
Male
8.8
Sample B
Male
8.7
Sample C
Female
6.4
Sample D
Female
8.5
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.