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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
540.5
nTPM
HPA Brain:
1287.6
nTPM
GTEx:
540.5
nTPM
FANTOM5:
1488.1
Scaled Tags Per Million
Pig:
859.4
nTPM
Mouse:
338.5
nTPM
Allen mouse:
14.8
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1287.6
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 998.1
2411
Female, age 72, unknown
1386.2
1830
Male, age 51, unknown
1223.2
1870
Female, age 42, unknown
1197.6
1833
Male, age 53, unknown
1167.3
2019
Male, age 18, unknown
1150.8
2828
Female, age 72, unknown
991.0
2586
Male, age 75, left hemisphere
746.4
2666
Male, age 74, left hemisphere
733.5
1827
Male, age 72, unknown
725.7
2219
Male, age 76, both hemispheres
659.2
Dorsal raphe nucleus nTPM: 718.9
2750
Male, age 76, both hemispheres
1303.3
2016
Female, age 72, unknown
795.7
1828
Male, age 53, unknown
649.8
2298
Female, age 72, unknown
459.5
2047
Male, age 72, unknown
386.4
Inferior colliculus nTPM: 621.7
1890
Male, age 53, unknown
656.0
1848
Female, age 42, unknown
645.5
2849
Male, age 72, unknown
599.9
2097
Female, age 72, unknown
585.1
Median raphe nucleus nTPM: 506.5
2220
Male, age 76, midline
506.5
Periaquaductal grey, anterior nTPM: 561.3
2502
Female, age 75, unknown
639.5
1947
Male, age 18, unknown
580.7
1795
Male, age 51, unknown
463.9
Periaquaductal grey, dorsal nTPM: 455.5
2464
Female, age 72, unknown
763.0
1831
Male, age 72, unknown
481.8
1840
Male, age 53, unknown
303.1
2850
Male, age 76, both hemispheres
274.1
Periaquaductal grey, lateral nTPM: 501.6
2272
Male, age 74, both hemispheres
601.8
2053
Male, age 18, unknown
585.5
2140
Male, age 76, both hemispheres
317.4
Pretectal area nTPM: 637.3
2316
Male, age 76, right hemisphere
956.0
1815
Male, age 53, unknown
906.6
2407
Male, age 75, both hemispheres
880.7
1817
Female, age 42, unknown
664.2
2007
Male, age 72, unknown
658.2
2825
Male, age 18, unknown
638.3
2273
Male, age 74, both hemispheres
569.3
2667
Female, age 75, unknown
512.6
2224
Female, age 72, unknown
493.5
1816
Male, age 51, unknown
366.0
1944
Female, age 72, unknown
365.2
Red nucleus nTPM: 1287.6
1865
Male, age 51, unknown
1547.5
1904
Male, age 53, unknown
1535.5
1821
Female, age 72, unknown
1457.8
2823
Male, age 76, right hemisphere
1439.6
2769
Male, age 72, unknown
1432.4
2227
Male, age 72, unknown
1414.9
2785
Male, age 18, unknown
1329.6
2503
Female, age 72, unknown
1263.4
1954
Female, age 42, unknown
1188.7
2588
Male, age 74, left hemisphere
1104.6
2725
Female, age 75, unknown
869.5
2584
Male, age 75, left hemisphere
867.6
Substantia nigra nTPM: 711.0
1851
Male, age 51, unknown
928.9
2590
Female, age 75, unknown
889.3
2583
Male, age 75, right hemisphere
882.9
2409
Female, age 72, unknown
854.0
1889
Female, age 72, unknown
740.0
2699
Male, age 18, unknown
664.8
2241
Male, age 72, unknown
598.6
1941
Male, age 53, unknown
554.4
1916
Female, age 42, unknown
538.1
2665
Male, age 74, both hemispheres
458.8
Superior colliculus nTPM: 860.1
1995
Male, age 72, unknown
1383.4
1913
Female, age 42, unknown
1263.5
1895
Male, age 76, right hemisphere
1022.9
2668
Female, age 75, unknown
947.4
1839
Male, age 51, unknown
854.9
2587
Male, age 74, left hemisphere
850.0
1796
Male, age 53, unknown
688.3
2664
Male, age 75, both hemispheres
587.6
2261
Male, age 18, unknown
506.2
2087
Female, age 72, unknown
497.2
Ventral tegmental area nTPM: 809.9
2223
Female, age 72, unknown
1051.9
2410
Female, age 72, unknown
1049.6
1942
Male, age 51, unknown
719.9
1915
Female, age 42, unknown
710.9
2021
Male, age 53, unknown
699.8
2218
Male, age 76, both hemispheres
627.2
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
540.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 540.5
Samples: 139
Max nTPM: 2222.5
Min nTPM: 152.6
Std nTPM: 331.8
Median nTPM: 447.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
2222.5
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
2072.7
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
1676.3
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
1419.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
1174.7
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
1162.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
1160.8
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
1148.5
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
1085.0
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
1084.6
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
1073.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
1018.0
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
977.7
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
967.3
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
961.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
955.7
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
929.3
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
910.3
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
848.7
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
794.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
772.9
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
768.2
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
760.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
748.1
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
724.0
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
714.4
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
711.7
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
698.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
693.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
687.2
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
685.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
680.3
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
676.3
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
673.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
665.9
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
626.0
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
624.9
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
614.7
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
611.3
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
590.8
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
577.6
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
577.6
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
574.9
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
574.2
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
572.7
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
570.0
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
568.8
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
568.4
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
560.6
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
557.8
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
546.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
528.9
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
510.0
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
498.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
496.9
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
495.4
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
493.0
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
490.6
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
486.5
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
486.5
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
484.3
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
476.8
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
470.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
465.6
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
463.4
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
458.5
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
457.1
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
452.9
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
450.7
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
447.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
446.7
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
442.6
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
441.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
440.9
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
439.1
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
437.7
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
429.8
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
428.4
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
426.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
426.3
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
423.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
420.3
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
416.2
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
414.8
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
413.6
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
408.2
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
398.8
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
398.7
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
391.7
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
390.3
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
386.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
382.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
377.1
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
373.6
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
371.5
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
371.2
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
369.0
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
366.8
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
362.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
354.8
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
349.3
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
327.6
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
322.9
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
317.2
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
314.8
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
308.3
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
305.0
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
300.3
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
299.3
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
297.7
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
296.8
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
296.2
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
295.4
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
294.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
289.8
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
282.8
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
282.5
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
281.3
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
281.2
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
280.1
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
269.6
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
265.8
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
265.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
264.8
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
255.6
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
253.2
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
251.3
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
250.5
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
241.6
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
217.6
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
210.3
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
203.7
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
201.5
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
199.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
195.9
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
189.1
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
165.9
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
165.7
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
152.6
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
338.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 338.6
Samples: 4
Max nTPM: 362.7
Min nTPM: 298.1
Sample A
Male
362.7
Sample B
Male
298.1
Sample C
Female
330.7
Sample D
Female
362.7
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.