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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
517.5
nTPM
HPA Brain:
750.4
nTPM
GTEx:
517.5
nTPM
FANTOM5:
474.0
Scaled Tags Per Million
Pig:
386.4
nTPM
Mouse:
253.5
nTPM
Allen mouse:
7.9
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
750.4
Sample id
Sample description
nTPM
Hippocampus nTPM: 496.4
1911
Female, age 85, right hemisphere
634.3
2529
Female, age 94, left hemisphere
561.8
1898
Male, age 80, left hemisphere
499.7
2621
Female, age 67, right hemisphere
472.0
1855
Male, age 76, left hemisphere
412.4
2148
Female, age 91, left hemisphere
398.4
Dentate gyrus nTPM: 488.8
2530
Female, age 94, left hemisphere
779.9
2528
Male, age 74, both hemispheres
562.8
2010
Male, age 76, both hemispheres
543.9
2246
Female, age 85, both hemispheres
404.9
2531
Female, age 67, both hemispheres
345.5
1927
Female, age 91, both hemispheres
295.7
Entorhinal gyrus nTPM: 602.9
2117
Female, age 91, right hemisphere
1118.1
2764
Male, age 80, right hemisphere
772.7
1938
Female, age 85, left hemisphere
505.4
2686
Male, age 75, right hemisphere
428.3
2613
Female, age 94, left hemisphere
407.6
1787
Male, age 76, left hemisphere
385.4
Hippocampus, CA1 nTPM: 401.3
2527
Male, age 74, both hemispheres
489.6
2082
Female, age 91, right hemisphere
472.3
1873
Female, age 85, both hemispheres
470.2
2749
Male, age 80, left hemisphere
392.9
2045
Male, age 76, both hemispheres
181.4
Hippocampus, CA2 nTPM: 535.3
1963
Male, age 80, left hemisphere
755.2
2249
Male, age 74, both hemispheres
662.5
2437
Female, age 94, left hemisphere
524.7
2113
Female, age 91, right hemisphere
498.6
1940
Female, age 85, left hemisphere
464.8
1892
Male, age 76, both hemispheres
306.1
Hippocampus, CA3 nTPM: 363.9
1891
Female, age 85, both hemispheres
750.8
1867
Male, age 76, both hemispheres
439.7
2436
Male, age 74, both hemispheres
367.3
2137
Male, age 80, left hemisphere
249.5
2620
Female, age 94, left hemisphere
202.5
2861
Female, age 67, both hemispheres
173.5
Parahippocampal cortex nTPM: 423.7
2692
Male, age 74, both hemispheres
603.4
2532
Female, age 72, left hemisphere
598.5
1990
Female, age 91, right hemisphere
564.5
1850
Male, age 80, both hemispheres
459.3
1933
Female, age 85, both hemispheres
444.4
2018
Male, age 76, both hemispheres
423.8
2245
Female, age 91, both hemispheres
407.7
2693
Female, age 94, both hemispheres
295.8
2250
Female, age 67, right hemisphere
266.9
2622
Female, age 67, right hemisphere
173.1
Perirhinal gyrus nTPM: 292.4
1794
Male, age 80, right hemisphere
337.5
2521
Female, age 94, right hemisphere
334.0
1847
Female, age 91, left hemisphere
282.3
2848
Male, age 76, right hemisphere
271.7
1841
Female, age 85, right hemisphere
236.5
Subiculum nTPM: 750.4
2042
Male, age 76, both hemispheres
1035.5
1901
Male, age 80, both hemispheres
915.9
1977
Female, age 85, both hemispheres
800.6
2438
Female, age 94, left hemisphere
671.4
2619
Male, age 74, both hemispheres
557.8
2729
Female, age 91, right hemisphere
521.0
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
517.5
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 517.5
Samples: 197
Max nTPM: 2175.8
Min nTPM: 96.8
Std nTPM: 333.7
Median nTPM: 430.8
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
2175.8
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
1807.7
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
1636.6
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
1510.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
1452.5
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
1444.4
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
1420.1
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
1270.1
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
1082.9
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
1081.5
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
1058.2
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
1054.2
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
1051.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
1036.1
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
1001.2
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
997.5
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
987.2
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
983.9
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
950.5
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
943.2
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
938.0
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
936.0
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
925.5
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
916.6
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
903.5
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
888.6
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
876.8
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
872.5
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
868.8
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
857.8
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
831.7
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
829.6
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
807.8
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
795.0
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
790.8
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
749.7
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
728.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
728.1
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
725.3
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
721.0
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
713.6
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
707.7
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
684.7
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
683.5
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
677.7
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
673.9
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
668.0
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
664.1
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
663.3
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
659.9
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
659.2
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
657.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
655.0
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
654.7
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
652.9
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
650.2
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
636.9
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
620.2
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
619.2
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
606.3
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
602.0
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
595.7
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
593.7
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
590.4
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
588.2
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
582.5
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
578.7
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
577.1
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
575.7
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
561.4
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
556.2
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
554.9
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
550.2
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
530.4
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
528.4
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
525.7
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
518.7
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
516.7
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
514.2
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
513.9
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
506.9
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
505.8
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
502.7
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
500.2
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
494.3
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
483.8
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
477.8
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
476.0
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
474.1
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
470.1
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
465.5
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
463.8
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
463.7
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
455.7
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
448.5
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
445.3
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
434.3
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
434.2
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
430.8
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
424.0
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
417.6
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
411.9
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
401.8
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
401.2
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
395.5
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
394.8
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
393.5
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
391.0
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
390.4
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
386.5
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
386.3
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
385.3
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
384.9
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
384.1
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
381.9
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
381.9
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
372.8
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
370.4
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
369.4
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
366.9
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
362.7
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
361.6
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
360.2
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
355.6
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
355.4
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
341.2
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
336.8
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
334.1
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
330.6
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
330.3
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
330.3
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
323.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
321.5
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
320.4
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
318.7
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
316.9
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
315.0
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
308.0
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
304.6
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
296.9
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
292.2
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
289.0
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
288.2
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
287.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
287.1
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
287.0
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
286.9
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
283.5
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
282.0
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
281.5
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
277.0
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
273.3
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
269.8
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
268.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
266.4
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
265.7
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
263.6
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
256.2
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
254.3
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
254.0
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
245.5
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
242.8
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
234.9
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
232.8
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
232.8
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
232.2
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
228.7
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
228.1
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
225.1
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
210.0
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
209.3
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
207.1
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
203.5
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
200.4
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
198.5
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
195.6
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
189.1
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
188.5
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
181.3
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
181.2
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
174.4
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
170.8
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
169.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
166.6
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
163.0
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
162.7
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
155.7
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
151.3
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
146.2
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
140.6
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
124.3
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
123.6
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
121.4
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
120.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
120.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
104.7
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
96.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
253.5
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 137.5
Samples: 4
Max nTPM: 185.3
Min nTPM: 83.9
Sample A
Male
185.3
Sample B
Male
136.5
Sample C
Female
144.4
Sample D
Female
83.9
Hippocampal formation nTPM: 253.5
Samples: 4
Max nTPM: 376.4
Min nTPM: 170.7
Sample A
Male
170.7
Sample B
Male
210.4
Sample C
Female
376.4
Sample D
Female
256.6
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.