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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RCE1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: 1.63
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
0.0038
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
41%
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
54%
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
52.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
28.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
25.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
23.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
23.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
23.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
22.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
21.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
21.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
21.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
20.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
20.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
20.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
19.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
19.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
19.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
19.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
18.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
18.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
18.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
17.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
17.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
17.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
17.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
17.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
17.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
16.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
16.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
16.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
16.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
15.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
15.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
15.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
15.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
15.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
15.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
14.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
14.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
14.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
14.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
14.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
14.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
14.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
13.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
13.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
12.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
12.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
12.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
11.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
11.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
11.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
11.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
11.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
9.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
9.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
9.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
8.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
7.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
6.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
6.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
6.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
4.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
3.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RCE1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: 2.14
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
0.0062
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
58%
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
0%
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.1
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
30.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
29.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
27.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
24.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
23.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
22.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
22.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
18.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
18.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
17.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
17.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
15.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
15.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
15.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
15.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
14.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
14.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
13.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
12.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
12.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
11.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
10.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
10.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
10.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
9.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
7.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
7.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
6.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
6.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
5.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
5.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
5.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
4.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
4.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
4.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
3.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
3.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
3.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
3.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
135
Tumor
2.3
473
Tumor
1.5
738
Normal
1.4
728
Normal
1.4
723
Tumor
1.2
742
Normal
1.2
983
Tumor
1.1
553
Tumor
1.0
527
Tumor
1.0
411
Tumor
0.9
744
Normal
0.8
131
Tumor
0.8
545
Tumor
0.7
777
Tumor
0.7
376
Normal
0.7
785
Tumor
0.7
356
Normal
0.6
328
Normal
0.6
756
Normal
0.6
1043
Tumor
0.6
365
Tumor
0.6
364
Normal
0.6
366
Normal
0.6
786
Normal
0.6
362
Normal
0.6
412
Normal
0.6
447
Tumor
0.5
327
Tumor
0.5
416
Normal
0.5
517
Tumor
0.5
112
Tumor
0.5
635
Tumor
0.5
778
Normal
0.5
368
Normal
0.5
746
Normal
0.4
355
Tumor
0.4
815
Tumor
0.4
523
Tumor
0.4
258
Normal
0.4
858
Normal
0.4
818
Normal
0.3
537
Tumor
0.3
535
Tumor
0.3
357
Tumor
0.3
484
Normal
0.3
525
Tumor
0.3
641
Tumor
0.3
221
Tumor
0.3
488
Normal
0.3
267
Tumor
0.3
394
Normal
0.2
227
Tumor
0.2
533
Tumor
0.2
128
Normal
0.2
671
Tumor
0.2
342
Normal
0.2
268
Normal
0.2
343
Tumor
0.2
573
Tumor
0.2
257
Tumor
0.2
823
Tumor
0.2
358
Normal
0.2
944
Normal
0.2
968
Normal
0.1
647
Tumor
0.1
388
Normal
0.1
745
Tumor
0.1
272
Normal
0.1
494
Normal
0.1
271
Tumor
0.1
231
Tumor
0.1
393
Tumor
0.1
666
Normal
0.1
824
Normal
0.1
713
Tumor
0.1
384
Normal
0.1
497
Tumor
0.1
956
Normal
0.1
515
Tumor
0.0
232
Normal
0.0
857
Tumor
0.0
493
Tumor
0.0
816
Normal
0.0
697
Tumor
0.0
392
Normal
0.0
114
Normal
0.0
977
Tumor
0.0
514
Normal
0.0
616
Normal
0.0
967
Tumor
0.0
213
Tumor
0.0
491
Tumor
0.0
361
Tumor
0.0
714
Normal
0.0
396
Normal
0.0
618
Normal
0.0
228
Normal
0.0
386
Normal
0.0
262
Normal
0.0
1014
Normal
0.0
351
Tumor
0.0
563
Tumor
0.0
286
Normal
0.0
952
Normal
0.0
664
Normal
0.0
492
Normal
0.0
817
Tumor
-0.1
938
Normal
-0.1
354
Normal
-0.1
755
Tumor
-0.1
955
Tumor
-0.1
976
Normal
-0.1
954
Normal
-0.1
111
Normal
-0.1
536
Normal
-0.1
284
Normal
-0.1
943
Tumor
-0.1
367
Tumor
-0.1
341
Tumor
-0.1
224
Normal
-0.1
526
Normal
-0.1
461
Tumor
-0.1
813
Tumor
-0.1
283
Tumor
-0.1
344
Normal
-0.1
524
Normal
-0.1
721
Tumor
-0.1
628
Normal
-0.1
145
Tumor
-0.1
498
Normal
-0.1
851
Tumor
-0.1
648
Normal
-0.1
534
Normal
-0.1
352
Normal
-0.1
1013
Tumor
-0.1
223
Tumor
-0.1
982
Normal
-0.1
126
Normal
-0.1
538
Normal
-0.1
716
Normal
-0.1
722
Normal
-0.1
127
Tumor
-0.1
513
Tumor
-0.2
617
Tumor
-0.2
212
Normal
-0.2
217
Tumor
-0.2
567
Tumor
-0.2
124
Normal
-0.2
1015
Tumor
-0.2
984
Normal
-0.2
516
Normal
-0.2
385
Tumor
-0.2
1045
Tumor
-0.2
661
Tumor
-0.2
471
Tumor
-0.2
363
Tumor
-0.2
627
Tumor
-0.2
123
Tumor
-0.2
546
Normal
-0.2
518
Normal
-0.2
136
Normal
-0.2
964
Normal
-0.2
415
Tumor
-0.2
978
Normal
-0.2
125
Tumor
-0.2
285
Tumor
-0.2
615
Tumor
-0.2
482
Normal
-0.2
975
Tumor
-0.2
1016
Normal
-0.2
662
Normal
-0.3
852
Normal
-0.3
737
Tumor
-0.3
211
Tumor
-0.3
672
Normal
-0.3
574
Normal
-0.3
695
Tumor
-0.3
814
Normal
-0.3
1046
Normal
-0.3
448
Normal
-0.3
642
Normal
-0.3
715
Tumor
-0.3
142
Normal
-0.3
462
Normal
-0.3
528
Normal
-0.3
957
Tumor
-0.3
146
Normal
-0.3
636
Normal
-0.3
937
Tumor
-0.3
261
Tumor
-0.3
214
Normal
-0.3
966
Normal
-0.3
958
Normal
-0.4
685
Tumor
-0.4
696
Normal
-0.4
571
Tumor
-0.4
686
Normal
-0.4
487
Tumor
-0.4
481
Tumor
-0.4
141
Tumor
-0.4
981
Tumor
-0.4
195
Tumor
-0.4
698
Normal
-0.4
554
Normal
-0.4
557
Tumor
-0.4
951
Tumor
-0.4
375
Tumor
-0.4
353
Tumor
-0.4
965
Tumor
-0.4
132
Normal
-0.4
191
Tumor
-0.5
953
Tumor
-0.5
478
Normal
-0.5
572
Normal
-0.5
391
Tumor
-0.5
472
Normal
-0.5
387
Tumor
-0.5
222
Normal
-0.5
665
Tumor
-0.5
483
Tumor
-0.5
741
Tumor
-0.5
558
Normal
-0.5
921
Tumor
-0.5
138
Normal
-0.6
196
Normal
-0.6
192
Normal
-0.6
218
Normal
-0.6
137
Tumor
-0.6
1044
Normal
-0.6
564
Normal
-0.6
963
Tumor
-0.6
395
Tumor
-0.6
113
Tumor
-0.6
727
Tumor
-0.7
568
Normal
-0.7
474
Normal
-0.7
383
Tumor
-0.8
477
Tumor
-0.9
663
Tumor
-0.9
926
Normal
-1.1
923
Tumor
-1.1
922
Normal
-1.2
918
Normal
-1.3
924
Normal
-1.3
743
Tumor
-1.3
917
Tumor
-1.3
724
Normal
-1.3
915
Tumor
-1.6
925
Tumor
-1.6
916
Normal
-1.6
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
147
Tumor
N/A
148
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
277
Tumor
N/A
278
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
161
Tumor
N/A
162
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
861
Tumor
N/A
862
Normal
N/A
863
Tumor
N/A
864
Normal
N/A
865
Tumor
N/A
866
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
877
Tumor
N/A
878
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
883
Tumor
N/A
884
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
423
Tumor
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
431
Tumor
N/A
311
Tumor
N/A
432
Normal
N/A
312
Normal
N/A
433
Tumor
N/A
313
Tumor
N/A
434
Normal
N/A
314
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
443
Tumor
N/A
444
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
451
Tumor
N/A
331
Tumor
N/A
452
Normal
N/A
332
Normal
N/A
455
Tumor
N/A
456
Normal
N/A
463
Tumor
N/A
464
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.