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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
73.2
nTPM
HPA Brain:
81.7
nTPM
GTEx:
73.2
nTPM
FANTOM5:
84.2
Scaled Tags Per Million
Pig:
83.6
nTPM
Mouse:
35.2
nTPM
Allen mouse:
1.2
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
81.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 78.7
2666
Male, age 74, left hemisphere
135.0
2586
Male, age 75, left hemisphere
122.0
1827
Male, age 72, unknown
83.3
2828
Female, age 72, unknown
81.4
2411
Female, age 72, unknown
68.6
1870
Female, age 42, unknown
63.4
1833
Male, age 53, unknown
62.7
1830
Male, age 51, unknown
61.9
2019
Male, age 18, unknown
58.0
2219
Male, age 76, both hemispheres
50.5
Dorsal raphe nucleus nTPM: 59.3
2047
Male, age 72, unknown
68.6
2750
Male, age 76, both hemispheres
67.6
1828
Male, age 53, unknown
64.0
2298
Female, age 72, unknown
51.1
2016
Female, age 72, unknown
45.2
Inferior colliculus nTPM: 53.6
1848
Female, age 42, unknown
56.2
1890
Male, age 53, unknown
55.1
2849
Male, age 72, unknown
52.8
2097
Female, age 72, unknown
50.3
Median raphe nucleus nTPM: 54.6
2220
Male, age 76, midline
54.6
Periaquaductal grey, anterior nTPM: 81.7
1947
Male, age 18, unknown
104.9
1795
Male, age 51, unknown
80.9
2502
Female, age 75, unknown
59.4
Periaquaductal grey, dorsal nTPM: 46.8
2464
Female, age 72, unknown
53.2
1831
Male, age 72, unknown
50.6
1840
Male, age 53, unknown
44.1
2850
Male, age 76, both hemispheres
39.5
Periaquaductal grey, lateral nTPM: 42.0
2053
Male, age 18, unknown
50.3
2272
Male, age 74, both hemispheres
38.9
2140
Male, age 76, both hemispheres
36.9
Pretectal area nTPM: 56.8
2007
Male, age 72, unknown
80.5
1816
Male, age 51, unknown
71.6
1944
Female, age 72, unknown
63.2
1815
Male, age 53, unknown
63.1
1817
Female, age 42, unknown
62.4
2825
Male, age 18, unknown
59.5
2316
Male, age 76, right hemisphere
54.6
2667
Female, age 75, unknown
54.5
2224
Female, age 72, unknown
49.0
2407
Male, age 75, both hemispheres
41.9
2273
Male, age 74, both hemispheres
24.6
Red nucleus nTPM: 74.9
2588
Male, age 74, left hemisphere
139.3
2584
Male, age 75, left hemisphere
102.1
2725
Female, age 75, unknown
78.0
1821
Female, age 72, unknown
70.7
2823
Male, age 76, right hemisphere
70.6
2769
Male, age 72, unknown
70.1
1904
Male, age 53, unknown
67.5
2227
Male, age 72, unknown
64.9
1954
Female, age 42, unknown
62.7
1865
Male, age 51, unknown
60.8
2503
Female, age 72, unknown
57.4
2785
Male, age 18, unknown
54.2
Substantia nigra nTPM: 75.7
1916
Female, age 42, unknown
108.3
2665
Male, age 74, both hemispheres
107.4
1851
Male, age 51, unknown
89.0
2583
Male, age 75, right hemisphere
74.5
1941
Male, age 53, unknown
72.8
1889
Female, age 72, unknown
68.2
2241
Male, age 72, unknown
62.8
2699
Male, age 18, unknown
62.2
2409
Female, age 72, unknown
56.3
2590
Female, age 75, unknown
55.4
Superior colliculus nTPM: 62.4
2668
Female, age 75, unknown
99.7
1796
Male, age 53, unknown
71.2
2261
Male, age 18, unknown
70.9
2587
Male, age 74, left hemisphere
66.2
2087
Female, age 72, unknown
64.4
2664
Male, age 75, both hemispheres
58.4
1895
Male, age 76, right hemisphere
58.2
1839
Male, age 51, unknown
57.9
1995
Male, age 72, unknown
39.4
1913
Female, age 42, unknown
38.1
Ventral tegmental area nTPM: 65.4
1915
Female, age 42, unknown
78.9
2410
Female, age 72, unknown
69.4
2218
Male, age 76, both hemispheres
68.7
1942
Male, age 51, unknown
60.4
2021
Male, age 53, unknown
57.8
2223
Female, age 72, unknown
57.1
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
73.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 73.2
Samples: 139
Max nTPM: 192.9
Min nTPM: 24.2
Std nTPM: 31.2
Median nTPM: 66.7
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
192.9
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
182.9
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
175.5
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
159.5
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
150.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
141.4
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
132.8
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
130.1
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
124.5
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
123.9
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
122.1
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
114.0
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
113.2
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
112.8
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
112.3
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
111.0
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
109.5
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
107.9
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
106.2
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
102.0
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
101.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
101.2
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
100.9
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
100.5
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
99.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
96.6
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
96.5
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
94.6
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
94.3
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
93.8
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
93.4
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
90.2
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
89.9
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
89.0
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
88.0
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
87.0
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
85.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
83.3
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
82.6
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
81.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
81.6
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
81.6
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
81.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
80.7
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
80.3
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
79.3
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
78.8
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
78.7
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
78.6
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
77.9
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
77.5
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
75.9
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
75.8
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
75.3
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
75.3
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
75.1
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
73.9
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
73.9
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
73.4
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
72.5
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
72.0
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
72.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
72.0
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
71.1
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
70.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
70.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
70.5
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
67.6
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
66.8
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
66.7
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
66.3
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
65.0
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
64.7
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
64.6
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
63.8
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
63.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
63.6
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
63.6
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
63.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
62.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
61.0
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
60.9
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
60.5
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
60.5
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
60.1
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
59.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
59.3
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
58.8
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
58.6
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
57.4
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
56.7
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
56.2
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
56.1
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
55.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
55.7
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
55.3
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
55.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
55.3
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
54.6
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
54.4
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
54.1
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
53.8
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
53.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
53.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
53.0
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
52.9
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
52.5
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
52.2
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
52.0
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
50.3
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
50.2
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
49.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
47.4
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
46.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
45.8
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
45.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
42.9
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
42.7
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
41.9
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
41.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
40.8
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
40.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
40.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
39.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
39.6
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
39.1
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
38.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
38.0
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
37.5
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
37.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
36.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
35.3
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
34.1
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
34.0
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
30.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
30.3
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
29.8
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
26.9
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
24.2
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
35.2
Mouse sample
Sample description
nTPM
Midbrain nTPM: 35.3
Samples: 4
Max nTPM: 42.5
Min nTPM: 30.6
Sample A
Male
42.5
Sample B
Male
31.6
Sample C
Female
30.6
Sample D
Female
36.3
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.