We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
High
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
65.5
nTPM
HPA Brain:
63.8
nTPM
GTEx:
65.5
nTPM
FANTOM5:
47.1
Scaled Tags Per Million
Pig:
55.5
nTPM
Mouse:
50.4
nTPM
Allen mouse:
2.1
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA050716
Glial cells
Not detected
Neuronal cells
High
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
63.8
Sample id
Sample description
nTPM
Hippocampus nTPM: 59.7
1855
Male, age 76, left hemisphere
69.3
2529
Female, age 94, left hemisphere
67.4
1898
Male, age 80, left hemisphere
63.8
2621
Female, age 67, right hemisphere
58.3
1911
Female, age 85, right hemisphere
54.7
2148
Female, age 91, left hemisphere
44.8
Dentate gyrus nTPM: 59.9
2530
Female, age 94, left hemisphere
98.6
2531
Female, age 67, both hemispheres
58.6
2010
Male, age 76, both hemispheres
57.6
1927
Female, age 91, both hemispheres
53.8
2528
Male, age 74, both hemispheres
47.0
2246
Female, age 85, both hemispheres
44.0
Entorhinal gyrus nTPM: 63.4
2686
Male, age 75, right hemisphere
82.3
1787
Male, age 76, left hemisphere
69.8
2613
Female, age 94, left hemisphere
68.9
2764
Male, age 80, right hemisphere
66.6
1938
Female, age 85, left hemisphere
53.3
2117
Female, age 91, right hemisphere
39.6
Hippocampus, CA1 nTPM: 50.0
2749
Male, age 80, left hemisphere
54.1
2527
Male, age 74, both hemispheres
51.6
2082
Female, age 91, right hemisphere
51.5
1873
Female, age 85, both hemispheres
47.5
2045
Male, age 76, both hemispheres
45.4
Hippocampus, CA2 nTPM: 62.0
2437
Female, age 94, left hemisphere
82.4
1892
Male, age 76, both hemispheres
70.0
1963
Male, age 80, left hemisphere
59.6
1940
Female, age 85, left hemisphere
58.6
2113
Female, age 91, right hemisphere
53.4
2249
Male, age 74, both hemispheres
48.0
Hippocampus, CA3 nTPM: 63.8
2861
Female, age 67, both hemispheres
103.9
1867
Male, age 76, both hemispheres
81.5
2137
Male, age 80, left hemisphere
59.0
2620
Female, age 94, left hemisphere
52.4
1891
Female, age 85, both hemispheres
48.2
2436
Male, age 74, both hemispheres
37.7
Parahippocampal cortex nTPM: 61.0
2622
Female, age 67, right hemisphere
81.3
2532
Female, age 72, left hemisphere
72.4
2018
Male, age 76, both hemispheres
65.3
1990
Female, age 91, right hemisphere
61.9
2692
Male, age 74, both hemispheres
60.8
1850
Male, age 80, both hemispheres
59.0
1933
Female, age 85, both hemispheres
57.6
2245
Female, age 91, both hemispheres
54.3
2693
Female, age 94, both hemispheres
53.6
2250
Female, age 67, right hemisphere
43.7
Perirhinal gyrus nTPM: 59.3
1841
Female, age 85, right hemisphere
67.0
1794
Male, age 80, right hemisphere
66.9
1847
Female, age 91, left hemisphere
60.9
2848
Male, age 76, right hemisphere
53.1
2521
Female, age 94, right hemisphere
48.8
Subiculum nTPM: 58.2
2438
Female, age 94, left hemisphere
71.6
2619
Male, age 74, both hemispheres
64.5
2042
Male, age 76, both hemispheres
59.4
1901
Male, age 80, both hemispheres
56.1
1977
Female, age 85, both hemispheres
52.0
2729
Female, age 91, right hemisphere
45.5
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
65.5
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 65.5
Samples: 197
Max nTPM: 188.8
Min nTPM: 14.5
Std nTPM: 29.0
Median nTPM: 58.9
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
188.8
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
157.4
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
156.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
156.0
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
153.8
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
149.0
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
137.8
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
133.9
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
133.2
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
130.9
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
128.1
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
121.6
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
115.4
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
112.5
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
110.1
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
104.3
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
102.0
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
102.0
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
101.3
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
101.2
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
99.5
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
98.1
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
95.9
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
93.6
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
93.0
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
92.7
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
91.7
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
91.4
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
90.0
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
88.8
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
87.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
87.8
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
86.8
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
86.6
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
85.7
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
85.3
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
85.2
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
84.9
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
84.8
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
84.5
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
83.7
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
83.3
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
83.1
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
81.7
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
81.4
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
81.0
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
80.7
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
80.5
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
80.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
79.2
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
78.3
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
77.2
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
77.2
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
77.0
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
76.5
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
76.3
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
76.3
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
76.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
75.7
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
75.6
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
75.3
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
74.7
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
74.7
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
72.8
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
72.7
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
72.4
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
72.2
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
71.2
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
71.1
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
71.1
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
71.0
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
70.6
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
69.9
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
69.8
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
69.7
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
69.4
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
68.4
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
68.0
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
67.1
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
66.8
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
66.5
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
66.1
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
65.7
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
65.2
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
64.3
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
63.6
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
63.4
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
63.4
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
63.1
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
62.5
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
62.5
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
61.6
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
61.5
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
60.9
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
60.5
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
59.9
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
59.2
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
59.0
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
58.9
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
58.6
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
58.1
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
57.8
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
57.8
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
57.4
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
57.2
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
57.2
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
56.8
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
56.6
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
56.4
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
56.1
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
56.0
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
55.8
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
55.3
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
55.2
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
54.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
54.6
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
54.5
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
54.4
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
54.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
53.7
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
53.3
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
52.9
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
52.9
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
52.9
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
52.8
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
52.8
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
52.2
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
52.0
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
51.7
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
51.6
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
51.6
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
51.5
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
51.2
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
51.0
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
50.8
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
50.2
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
49.7
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
49.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
49.3
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
49.1
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
48.4
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
45.8
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
45.7
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
45.6
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
45.1
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
44.9
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
44.8
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
44.4
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
44.2
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
44.0
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
43.5
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
43.4
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
43.4
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
43.4
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
43.3
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
43.1
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
42.1
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
41.9
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
41.8
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
41.7
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
41.6
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
41.4
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
41.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
41.3
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
40.3
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
40.0
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
39.9
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
38.5
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
37.6
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
37.4
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
37.0
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
37.0
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
36.8
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
36.8
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
36.7
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
36.5
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
34.9
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
34.7
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
34.1
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
34.0
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
34.0
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
33.0
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
32.7
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
32.1
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
31.9
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
30.8
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
29.9
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
29.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
28.7
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
28.6
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
28.0
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
27.3
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
27.2
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
27.1
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
22.4
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
18.3
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
14.5
Show allShow less
HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
50.4
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 50.4
Samples: 4
Max nTPM: 54.8
Min nTPM: 46.8
Sample A
Male
46.8
Sample B
Male
50.5
Sample C
Female
54.8
Sample D
Female
49.6
Hippocampal formation nTPM: 45.8
Samples: 4
Max nTPM: 50.9
Min nTPM: 40.6
Sample A
Male
48.8
Sample B
Male
40.6
Sample C
Female
43.0
Sample D
Female
50.9
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.