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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
46.5
nTPM
HPA Brain:
149.4
nTPM
GTEx:
46.5
nTPM
FANTOM5:
68.3
Scaled Tags Per Million
Pig:
89.0
nTPM
Mouse:
79.3
nTPM
Allen mouse:
4.2
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
149.4
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 143.6
2586
Male, age 75, left hemisphere
253.7
1833
Male, age 53, unknown
155.8
2828
Female, age 72, unknown
146.3
1870
Female, age 42, unknown
143.2
1827
Male, age 72, unknown
136.9
2411
Female, age 72, unknown
133.9
1830
Male, age 51, unknown
133.5
2666
Male, age 74, left hemisphere
131.0
2219
Male, age 76, both hemispheres
113.2
2019
Male, age 18, unknown
87.9
Dorsal raphe nucleus nTPM: 149.4
1828
Male, age 53, unknown
173.9
2016
Female, age 72, unknown
167.0
2047
Male, age 72, unknown
164.1
2298
Female, age 72, unknown
131.5
2750
Male, age 76, both hemispheres
110.7
Inferior colliculus nTPM: 146.0
2849
Male, age 72, unknown
165.1
1848
Female, age 42, unknown
159.4
1890
Male, age 53, unknown
137.0
2097
Female, age 72, unknown
122.3
Median raphe nucleus nTPM: 105.2
2220
Male, age 76, midline
105.2
Periaquaductal grey, anterior nTPM: 138.4
2502
Female, age 75, unknown
166.7
1795
Male, age 51, unknown
125.3
1947
Male, age 18, unknown
123.1
Periaquaductal grey, dorsal nTPM: 140.9
1840
Male, age 53, unknown
184.5
2464
Female, age 72, unknown
143.2
2850
Male, age 76, both hemispheres
123.6
1831
Male, age 72, unknown
112.3
Periaquaductal grey, lateral nTPM: 136.1
2053
Male, age 18, unknown
163.5
2140
Male, age 76, both hemispheres
133.1
2272
Male, age 74, both hemispheres
111.7
Pretectal area nTPM: 126.0
2407
Male, age 75, both hemispheres
171.0
2825
Male, age 18, unknown
170.7
2667
Female, age 75, unknown
142.2
2273
Male, age 74, both hemispheres
129.6
2224
Female, age 72, unknown
125.4
1816
Male, age 51, unknown
120.6
1815
Male, age 53, unknown
110.6
1944
Female, age 72, unknown
109.2
1817
Female, age 42, unknown
106.0
2316
Male, age 76, right hemisphere
105.0
2007
Male, age 72, unknown
95.6
Red nucleus nTPM: 137.9
2584
Male, age 75, left hemisphere
161.4
2769
Male, age 72, unknown
159.6
2588
Male, age 74, left hemisphere
154.4
2227
Male, age 72, unknown
154.0
1821
Female, age 72, unknown
150.8
1954
Female, age 42, unknown
146.0
2503
Female, age 72, unknown
138.1
1904
Male, age 53, unknown
134.4
1865
Male, age 51, unknown
132.7
2725
Female, age 75, unknown
114.1
2823
Male, age 76, right hemisphere
112.2
2785
Male, age 18, unknown
96.4
Substantia nigra nTPM: 149.0
2699
Male, age 18, unknown
209.8
2583
Male, age 75, right hemisphere
175.0
1916
Female, age 42, unknown
168.5
2665
Male, age 74, both hemispheres
159.4
2241
Male, age 72, unknown
156.7
1851
Male, age 51, unknown
148.0
2590
Female, age 75, unknown
137.5
2409
Female, age 72, unknown
121.7
1889
Female, age 72, unknown
118.6
1941
Male, age 53, unknown
94.9
Superior colliculus nTPM: 143.0
2664
Male, age 75, both hemispheres
254.9
1839
Male, age 51, unknown
161.7
1796
Male, age 53, unknown
151.1
2587
Male, age 74, left hemisphere
143.0
2261
Male, age 18, unknown
142.2
2668
Female, age 75, unknown
125.3
1995
Male, age 72, unknown
123.7
1895
Male, age 76, right hemisphere
111.6
1913
Female, age 42, unknown
109.8
2087
Female, age 72, unknown
106.6
Ventral tegmental area nTPM: 135.2
2223
Female, age 72, unknown
161.9
2410
Female, age 72, unknown
149.8
1915
Female, age 42, unknown
139.9
1942
Male, age 51, unknown
134.8
2021
Male, age 53, unknown
127.5
2218
Male, age 76, both hemispheres
97.6
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
46.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 46.5
Samples: 139
Max nTPM: 83.3
Min nTPM: 17.5
Std nTPM: 11.2
Median nTPM: 45.2
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
83.3
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
75.4
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
75.1
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
69.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
68.7
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
66.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
66.4
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
66.2
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
65.7
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
62.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
61.6
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
61.5
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
61.4
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
61.1
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
61.0
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
60.1
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
60.1
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
59.8
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
59.8
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
59.5
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
58.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
58.4
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
57.9
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
57.8
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
56.3
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
56.3
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
56.2
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
56.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
56.1
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
55.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
55.0
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
54.6
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
54.6
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
54.1
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
54.1
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
53.7
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
52.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
52.6
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
52.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
51.3
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
51.3
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
50.4
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
50.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
50.2
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
49.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
49.7
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
49.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
49.1
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
49.0
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
48.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
48.0
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
48.0
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
47.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
47.8
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
47.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
47.7
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
47.6
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
47.3
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
47.1
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
47.0
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
46.9
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
46.9
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
46.3
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
46.2
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
46.2
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
45.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
45.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
45.8
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
45.6
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
45.2
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
45.1
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
44.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
44.8
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
44.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
44.8
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
44.5
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
44.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
44.3
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
44.3
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
44.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
43.9
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
43.8
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
43.8
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
43.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
43.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
43.4
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
43.3
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
43.2
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
43.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
43.0
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
42.6
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
42.5
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
42.3
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
42.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
42.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
41.7
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
41.6
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
41.5
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
41.4
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
41.1
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
41.1
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
41.0
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
40.9
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
40.2
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
40.1
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
40.1
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
39.8
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
39.6
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
39.6
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
39.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
39.2
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
39.1
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
37.4
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
36.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
36.6
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
35.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
35.2
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
35.1
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
34.8
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
34.6
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
34.4
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
34.2
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
33.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
33.1
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
32.0
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
31.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
31.5
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
31.4
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
30.4
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
30.0
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
29.0
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
28.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
27.9
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
27.2
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
26.9
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
25.4
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
24.0
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
19.8
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
17.5
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
79.3
Mouse sample
Sample description
nTPM
Midbrain nTPM: 79.3
Samples: 4
Max nTPM: 80.4
Min nTPM: 77.7
Sample A
Male
80.1
Sample B
Male
80.4
Sample C
Female
79.0
Sample D
Female
77.7
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.